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This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Members of the carrageenan-producing seaweeds of the genus Kappapphycus have a complicated taxonomic history particularly with regard to species identification. Many taxonomic challenges in this group have been currently addressed with the use of mtDNA sequences. The phylogenetic status and genetic diversity of one of the lesser known species, Kappaphycus cottonii, have repeatedly come into question. This study explored the genetic variation in Philippine K. cottonii using the mtDNA COI-5P gene and cox2-3 spacer sequences. The six phenotypic forms in K. cottonii did not correspond to the observed genetic variability; hinting at the greater involvement of environmental factors in determining changes to the morphology of this alga. Our results revealed that the Philippine K. cottonii has the richest number of haplotypes that have been detected, so far, for any Kappaphycus species. Our inferred phylogenetic trees suggested two lineages: a lineage, which exclusively includes K. cottonii and another lineage comprising the four known Kappaphycus species: K. alvarezii, K. inermis, K. malesianus, and K. striatus. The dichotomy supports the apparent synamorphy for each of these lineages (the strictly terete thalli, lack of protuberances, and the presence of a hyphal central core in the latter group, while the opposite of these morphologies in K. cottonii). These findings shed new light on understanding the evolutionary history of the genus. Assessing the breadth of the phenotypic and genetic variation in K. cottonii has implications for the conservation and management of the overall Kappaphycus genetic resources, especially in the Philippines.

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As the global demand for the carrageenophyte Kappaphycus is steadily increasing, its overall productivity, carrageenan quality, and disease resistance are gradually declining. In the face of this dilemma, wild Kappaphycus populations are viewed as sources of new cultivars that could potentially enhance production; therefore, assessment of their diversity is crucial. This study highlights the morphological and genetic diversity of wild Kappaphycus species obtained from two sites in the Philippines. Nucleotide alignments of available 5′ region of the mitochondrial cytochrome c oxidase subunit I (COI-5P) and cox2-3 spacer sequences of Kappaphycus confirmed the presence of K. alvarezii in Guiuan, Eastern Samar and K. striatus in Bolinao, Pangasinan. Based on the concatenated sequences of the COI-5P and the cox2-3 spacer, nine novel haplotypes were observed along with other published haplotypes. However, there was no relationship between haplotype and morphology. These newly recognized haplotypes indicate a reservoir of unutilized wild genotypes in the Philippines, which could be taken advantage of in developing new cultivars with superior traits. DNA barcodes generated from this study effectively expand the existing databank of Kappaphycus sequences and can provide insights in elucidating the genetic diversity of Kappaphycus species in the country.

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Collectively known as eucheumatoids, Eucheuma denticulatum, Kappaphycus alvarezii, K. malesianus, and K. striatus are the main farmed seaweed species in the Philippines. The success of seaweed farming for over five decades in the country is due, in part, to the high diversity of cultivars maintained by the Filipino farmers. Notwithstanding the fact that many eucheumatoid cultivars are presently (and consistently) recognized by the Filipino farmers, there has been no attempt to summarize the current state of the local traditional knowledge about the diversity of this seaweed group, especially with reference to the taxonomy, cultivar designation and distribution. Factors based on present day local knowledge on the eucheumatoid cultivars and what is known on genetic identification in the Philippines were also discussed. A total of 66 cultivars recognized across 58 provinces in the Philippines were documented. Most of these cultivars were morphologically identified as either K. alvarezii or K. striatus, however, the majority were yet to be genetically identified. In part, due to higher demand of kappa-carrageenan extract as compared from the iota type, K. alvarezii and K. striatus were widely cultivated in the Philippines than that of E. denticulatum. Only in the southern Philippines that K. malesianus is currently cultivated. The diverse cultivars identified in this study suggest that the Filipino farmers possess important traditional knowledge that can be useful for future crop selection and breeding.