Summary1. Environmental factors, such as wind, may have a strong influence on the detection probability and detection rate of acoustic telemetry tags. The effect of environmental factors may obscure biological effects and distort the interpretation of acoustic telemetry data. 2. This study was undertaken with fish internally tagged with acoustic transmitters containing depth sensors and monitored by an array of automatic receivers. The influence of environmental factors on the hourly detection rate was evaluated using environmental data from a nearby climate station. The signal detection probability was modelled within the framework of general theory of sound propagation in water. 3. Wind was found to have the strongest influence on the detection rate. Transmitter depth range and rain also contributed significantly to the variation in detection rate. 4. By modelling the attenuation coefficient as a function of wind speed, we show that the probability of detecting a free-swimming acoustically tagged animal can be successfully modelled using general sound propagation theory. 5. The approach of modelling detection probability as a function of the attenuation coefficient offers a wide applicability, as it implies a direct link between detection probability and physical characteristics of the water at the study site. Correcting for varying detection probability is in many cases extremely important to do, since rhythms in biological/behavioural factors are often confounded with environmental variables that influence detection probability (e.g. sea breeze, tide).

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Salmon lice Lepeophtheirus salmonis Krøyer may affect survival and growth of anadromous salmonids through physiological stress and/or behavioural changes. Using acoustic telemetry tracking, we investigated the behaviour of 30 infected sea trout Salmo trutta throughout the summer in a fjord with very high salmon lice infection pressure. Most of the tracked sea trout adopted a movement pattern expected to suppress salmon lice infestation, as they showed a strong preference for fresh or brackish water, spending most of the time close to a river outlet or even migrating into the river. Highly infested sea trout preferred shallower depths, associated with lower salinity. The fish lost to predation stayed further away from the river outlet than nonpredated fish, and were likely subjected to a stronger infection pressure. Half of the tracked group were treated with a salmon lice prophylaxis, emamectin benzoate. The effect of treatment on infestation was monitored in a separate group held in a sea cage and found to be moderate; the mortality in this group was associated with infestation by motile lice stages. In contrast, treatment was not found to have an effect on tracked fish behaviour. It is likely that some physiological and behavioural responses to high salmon lice infection pressure may be present even after a prophylaxis treatment, in particular when the treatment is given after exposure to salmon lice infection. We conclude that increased salmon lice infection pressure associated with altered salmon farming practice may have the potential to influence the marine behaviour and growth of sea trout.

–  Ultrasonic telemetry and hydrodynamic modelling were used to study the migratory behaviour of 54 wild Atlantic salmon (Salmo salar) smolt captured in freshwater during their downstream migration and tracked in 2 years through a shallow estuary system. A high‐density, fixed array of receivers provided detailed spatial and temporal resolution of behaviour in the second year of study. Smolt migration in the river occurred mostly at night and downstream migration was slower during the day. In the estuary, smolt moved seaward on ebbing tides and landward on flooding tides. The effect of current velocity was greater during the night than during the day. We documented for the first time that current velocity and diurnal period only accounted for approximately one‐third of the variation in smolt ground speeds in the estuary, indicating that smolt movements were far less passive than previously reported. Smolt energetic status had no effect on smolt swimming behaviour or migratory performance. With an increase in salinity, smolt seaward movements during flooding tides were more frequent, and overall seaward ground velocity increased. The increase in salinity experienced by the smolt during their migration through the leading edge of saltwater intrusion thus induced a behavioural transition from a more passive, fluvial migration to a more active‐ and seaward‐oriented migration.

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Background: Knowledge of the complete horizontal migration and vertical movements of Atlantic salmon (Salmo salar L.) during the marine phase is important for understanding the link between individual processes and population recruitment. We studied the detailed migration behaviour of six post-spawned adult Atlantic salmon from a North Norwegian river, during the entire ocean migration, by using high-resolution light-based geolocation archival tags. Results:The fish performed long-distance migrations and utilized Arctic areas from the eastern Barents Sea, to areas of Jan Mayen Island, and north to Svalbard. Four of six individuals exhibited a strong fidelity towards Jan Mayen Island, particularly during winter, which may suggest that the ecological conditions in these waters may be important for overwintering. One fish displayed exclusive utilization of the Barents Sea, indicating that growth and survival of some individuals are entirely dependent on these waters. The fish displayed a pelagic behaviour and all individuals spent more than 83% of the time in the uppermost 10 m of the water column. There was a strong seasonal trend in diving intensity, with the number of dives increasing with day length, independent of individuals' spatial distribution. Diving depth was positively correlated with the depth of the mixed layer. Conclusions:The Atlantic salmon displayed large individual variation in horizontal migrations, utilizing different ocean areas north of the Arctic Circle. This means that, despite the overall fidelity towards northern latitudes, individuals from the same population may experience highly different ecological conditions, potentially contributing to within-population variation in growth and survival. The seasonal correlation between diving intensity and day length, and spatial correlation between diving depth and depth of the mixed layer, indicate that the overall depth use of the Atlantic salmon depends on both spatially independent seasonal factors, and dynamic oceanographic conditions that facilitate food aggregations. This is the first study of Atlantic salmon to present detailed information about individuals' continuous horizontal migration and simultaneous vertical movements during the entire ocean migration, thus providing novel information on how habitat use change throughout the ocean residency.

Migration patterns of wild Atlantic salmon Salmo salar smolt were examined in a coastal embayment in the Gaspé peninsula of Québec, Canada. Twenty-four smolt in 2005 and 30 in 2006 were tagged with coded ultrasonic transmitters, and their migration throughout the bay was monitored using an array of fixed VR2 hydrophone receivers. Migration patterns were complex, with some smolt taking a direct route through the coastal embayment and others repeatedly changing direction over short spatial and temporal scales. Migration was mainly an active process with an overall outward (seaward) migration in the face of an inward residual circulation. Swimming direction was mainly outward during nocturnal inflowing currents but was more dispersed during daytime and nocturnal outflowing currents; swimming speed was greater during daytime than during nighttime. This pattern was consistent with smolt migrating offshore nocturnally and using daytime for prey detection and predator avoidance. Salinity had a strong effect: exposure to more saline waters caused increased swimming speeds. These observations are consistent with the hypothesis that smolt exploit an innate compass to maintain a preferred bearing and that the speed and direction of swimming is controlled by salinity and the diurnal cycle.

Atlantic salmon (Salmo salar) males may mature early in life in freshwater, rather than maturing after a migration to sea, if their size is above a threshold value. We analyzed the spatiotemporal variation in size and incidence of the early maturity tactic among males over an 8-year period in six subpopulations on two branches of a river and collected environmental data on each site and across the river scape. A positive longitudinal trend in the frequency of early maturing males that was stable over the 8-year period occurred from the mouth to the head of the river. Threshold sizes for early maturation varied among subpopulations; size thresholds for male parr to mature were higher in downstream habitats and lowest upstream. This pattern was consistent in both river branches over the 8-year period and was not related to either the density of parr or site-specific abiotic habitat characteristics. However, the cumulative incidence of habitat features that could impede migration of large individuals increased with increasing upstream distance. Migration costs may contribute to the observed variation in threshold sizes.