This study was undertaken to estimate the antimicrobial resistance of Salmonella isolated from raw chicken. From November 2003 to April 2004 a total of 120 chicken carcasses were collected from 36 randomly selected sale points (supermarkets, traditional market, poultry slaughter house, flocks) in the urban and periurban zones of Dakar, Sénégal, and examined for the presence of Salmonella. Salmonella was isolated from 75 (62.5%) of the examined samples. Out of the 90 Salmonella isolates obtained, twenty one serotypes were identified, from which the most prevalent were S. Kentuchy 30%, S. Muenster (13.3%), S. Brancaster (8.8%), S. Enteritidis and S. Hadar (6.6%). All Salmonella isolates were tested for their susceptibility to 16 selected antimicrobial agents by the agar diffusion method. Seventy one (78.9%) isolates were resistant to one or more antimicrobials. Out of 71 resistant Salmonella isolates, 33 (46.5%) showed multiple resistance to five or more different antimicrobials. Resistance to ampicillin, trimethoprim, trimethoprim-sulphamethoxazole, tetracyclin and sulphonamides was the most frequent. We found 36 different patterns of multiresistant strains. The high level of antibiotic resistance of foodborne Salmonella isolates in the present study is an indication of indiscriminate and continuous use of subtherapeutic doses of antibiotics in animals. Furthermore, the results showed the possible significance of chicken meat as a source of multiple antimicrobial-resistant Salmonella for human infections and suggest the need for detailed epidemiological study.

La rage est une zoonose endémique dans les pays en développement et compte parmi les pathologies virales les plus virulentes et mortelles. Elle constitue une menace pour la sante publique et animale au Burkina Faso. La présente étude transversale a été conduite pour décrire l’épidémiologie de la rage et les connaissances, attitudes et pratiques (CAP) des populations à Ouagadougou. Elle a consisté en une collecte de données auprès des ménages et des structures techniques impliquées dans la prévention, le contrôle et la surveillance de la rage humaine et animale. L’enquête CAP a été réalisée auprès de 616 ménages. Elle a montré que la majorité des participants avaient entendu parler de la rage humaine (80,7 %) et animale (94,6 %), savaient qu’elle se transmettait essentiellement à la suite de morsure par un chien infecte (94,2 %) et étaient capables de citer correctement au moins deux voies de transmission de la maladie (65,7 %). En revanche, seuls 9,7 % des propriétaires de chiens affirmaient être capables de financer la vaccination antirabique canine annuelle. Les principaux canaux d’information et de communication sur la rage utilises par les participants étaient l’entourage (41,8 %), l’école (33,4 %) et les médias (24,8 %). Quant à l’étude épidémiologique rétrospective, qui s’est appuyée sur les documents disponibles au sein des structures nationales, elle a mis en évidence qu’en moyenne 4172 cas de morsures étaient enregistrées chaque année, que seules 31,7 % des personnes mordues avaient bénéficié d’une prophylaxie postexposition complète et que 68 % des animaux testes étaient positifs au virus rabique. Ces études confirment la présence du risque rabique dans le pays et montrent la nécessite de renforcer l’éducation et l’engagement communautaire ainsi qu’une étroite collaboration entre les secteurs de la santé animale et de la santé humaine pour une gestion intégrée des cas de morsures.

Avian pathogenic Escherichia coli (APEC), a subset of extraintestinal pathogenic E. coli (ExPEC), are the etiologic agent of avian colibacillosis, one of the main causes of economic losses in the poultry industry. The aim of this study was to characterize E. coli isolated from diseased chickens in Senegal to elucidate their virulence potential and antimicrobial resistance (AMR). A total of 58 isolates, each from a separate farm, were characterized for AMR, virulence, and AMR genes, phylogroup, serogroup, biofilm formation, and pulsed-field gel electrophoresis, and for two isolates, whole-genome sequencing (WGS). Fifty isolates (86.2%) were multidrug resistant. Many AMR genes were detected, including variants of bla encoding resistance to third-generation cephalosporins (five isolates [8.6%]). Most fluoroquinolone-nonsusceptible isolates (21/26) were carriers of mutations in gyrA (Ser83Leu, Asp87Asn, and/or Asp87Tyr) and/or parC (Ser80Ile) genes. Forty-nine (84.5%) isolates exhibited at least one of the virulence markers of APEC, among which 23 (39.7%) were defined as potential virulent APEC. In addition, 10 isolates, of which 9 were defined as APEC, carried virulence profiles corresponding to ExPEC. Seven isolates, of which six were classified as ExPEC, belonged to phylo-serogroup F-O25, and following WGS of two of these isolates, were found to belong to the serotype O25:H1 and to the sequence type ST624. Some isolates classified as ExPEC, including F-O25, were found to strongly produce biofilm, suggesting their capability to persist for long time in the environment. F-O25-isolates, although found in different widely separated farms, formed a single cluster that included clones, suggesting that these isolates may have originated from a common source. Taken together, these results suggest that some E. coli involved in chicken colibacillosis in Senegal may pose a human health risk.

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Background: Milk is a nutrient-rich food that makes an important contribution to diets in several Low and Middle Income Countries such as Senegal. Milk can also harbour several pathogenic microorganisms. As in other low and middle income countries, the dairy industry in Senegal is growing, with an expansion of farms to meet rapidly growing demand in the cities. However, most of the production still happens in the informal sector, and little is known about consumption of milk and milk products, or knowledge, awareness and practices of actors in informal dairy supply chains. Methods: We conducted structured focus group discussions with dairy farmers and milk processors in three selected regions (Dakar, Thies and Fatick) in Senegal to investigate the consumption practices, awareness of milk borne hazards, and practices relevant to the risk of milk contamination to gain a deeper understanding of drivers of milk-borne diseases. Data on the consumption of milk and milk products were also collected using a closed questionnaire. Results: Results indicate that milk is an important part of the diet in the study regionsand raw milk consumption is very common. The most common milk product consumed was fermented milk. Awareness of milk borne hazards was limited. Several farmers and processors reported risky practices, despite being aware of better practices, due to cultural beliefs. In households, children, pregnant women and older people were prioritised when milk and milk products were distributed. Dairy farmers and milk processors were more concerned with the lack of food for animals, low production and seasonality of production than the safety of the milk and milk products. Conclusions: Lack of awareness of milk borne infections and some traditional practices put milk and milk product consumers in the study area at high risk of milk borne diseases.. Prioritising certain sub population at households (Pregnant women and children) makes then vulnerable to milk-borne hazards. It will be challenging to change the risky practices as they are motivated by cultural beliefs hence the best strategy to promote milk safety will be to encourage the boiling of milk by consumers.

Escherichia coli is a normal inhabitant of the intestinal microbiota of chickens, a small proportion of which may be avian pathogenic E. coli (APEC) or potential extraintestinal pathogenic E. coli (ExPEC), capable of causing disease in humans. These E. coli may also be resistant to antimicrobials of critical importance in human or veterinary health. This study aims to 1) determine the prevalence of antimicrobial resistance (AMR) and resistance genes, multidrug resistance (MDR), chromosomal mechanisms of quinolone-resistance and virulence profiles of E. coli isolated from healthy chicken farms in the region of Dakar, Senegal, 2) investigate the spread of third-generation cephalosporins (3GC) resistance in E. coli isolated from healthy chicken farms with respect to virulence and resistance genes, serogroups, Pulsed-Field Gel Electrophoresis (PFGE), phylogenetic groups, plasmid types and transferability and 3) determine whether nonsusceptibility against 3GC on farms could be linked to risk factors. More than 68% of isolates from environmental faecal and drinking water samples, carcasses and carcass washes collected on 32 healthy chicken farms were multidrug resistant (MDR), resistance to antimicrobials critical in human health (3GC or ciprofloxacin) being found in all types of samples. Ciprofloxacin resistance was due to mutations in the gyrA and parC genes, 95% of tested farms harboring isolates carrying three mutations, in gyrA (Ser83Ile and Asp87Asn) and parC (Ser80Ile). Nine of the 32 farms (28.1%) demonstrated the presence of one or more 3GC-nonsusceptible indicator isolates but none of the potential risk factors were significantly associated with this presence on farms. Following ceftriaxone enrichment, presumptive extended-spectrum beta-lactamase/AmpC-beta-lactamase (ESBL/AmpC)-producer isolates were found in 17 of the 32 farms. 3GC resistance was mediated by blaCMY-2 or blaCTX-M genes, blaCTX-M being of genotypes blaCTX-M-1, blaCTX-M-8 and for the first time in chickens in Senegal, the genotype blaCTX-M-15. Clonally related ESBL/AmpC-producer isolates were found on different farms. In addition, blaCTX-M genes were identified on replicon plasmids I1 and K/B and blaCMY-2 on K/B, I1 and B/O. These plasmids were found in isolates of different clusters. In addition, 18 isolates, some of which were ESBL/AmpC-producers, were defined as potential human ExPEC. In conclusion, E. coli isolates potentially pathogenic for humans and demonstrating MDR, with resistance expressed against antimicrobials of critical importance in human health were found in healthy chickens in Senegal. Our results suggest that both clonal spreading and horizontal gene transfer play a role in the spread of 3GC-resistance and that chickens in Senegal could be a reservoir for AMR and ExPEC for humans. These results highlight the importance of raising awareness about compliance with biosecurity measures and prudent use of antimicrobials.

Background Antimicrobial resistance (AMR) in food-producing animals is a global public health issue. This study investigated AMR and virulence profiles of E. coli isolated from healthy chickens in Vietnam. E. coli were isolated from fecal samples collected in five chicken farms located in the provinces of Hoa Binh, Thai Nguyen and Bac Giang in the North of Vietnam. These isolates were examined by disk diffusion for their AMR, PCR for virulence and AMR genes, pulsed-field gel electrophoresis for relatedness between bla CMY-2 / bla CTX-M –positive isolates, electroporation for transferability of bla CMY-2 or bla CTX-M genes and sequencing for mutations responsible for ciprofloxacin resistance. Results Up to 99% of indicator isolates were multidrug resistant. Resistance to third-generation cephalosporins (3GC) was encoded by both bla CTX-M and bla CMY-2 genes; bla CTX-M genes being of genotypes bla CTX-M-1 , − 14 , − 15 , − 17 , − 57 and − 87 , whereas ciprofloxacin resistance was due to mutations in the gyrA and parC genes. Some isolates originating from farms located in different provinces of Vietnam were found to be closely related, suggesting they may have been disseminated from a same source of contamination. Plasmids may also have played a role in the diffusion of 3GC-resistance as the bla CMY-2 gene was located on plasmids A/C and I1, and the bla CTX-M gene variants were carried by I1, FIB, R and HI1. Plasmids carrying the bla CMY-2 / bla CTX-M genes also co-transferred resistance to other antimicrobials. In addition, isolates potentially capable of infecting humans, of which some produced bla CMY-2 / bla CTX-M , were identified in this study. Conclusions Both clones and plasmids could be involved in the dissemination of 3GC-resistant E. coli within and between chicken farms in Vietnam. These results demonstrate the necessity to monitor AMR and control antimicrobial use in poultry in Vietnam. Electronic supplementary material The online version of this article (10.1186/s12917-019-1849-1) co...

Consumption of milk and dairy products has increased significantly in Senegal in the last decade, and a large part of the local production comes from small processing units spread all over the country. We collected 85 bulk-tank milk samples from 68 smallholder dairy farms throughout the territory. Microbiological quality of milk samples was analyzed according to the official standards. Further, raw milk and pasteurized milk were screened for Mycobacterium bovis, Coxiella burnetii, and anti-Brucella abortus antibodies. Ninety-three percent of pasteurized milk samples, 92% of raw milk samples, and 81% of sour milk samples failed to meet official standards. Pathogens detected in milk were C. burnetii (6/41, 15%), which seems to be endemic in Senegal, coagulase-positive staphylococci (18/70, 26%), and Salmonella Johannesburg in one sample. Further analysis of coagulase-positive staphylococci isolated from samples containing more than 10(4) colony-forming units per gram showed the presence of enterotoxigenic strains in 9 of the 10 samples. These results confirm the poor microbiological quality of milk produced by small units in Senegal, especially and surprisingly of pasteurized milk. This highlights the need to implement good hygiene practices, particularly in the postpasteurization process, and an effective monitoring throughout the production and delivery chain.