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Abstract-Hyracks is a new partitioned-parallel software platform designed to run data-intensive computations on large shared-nothing clusters of computers. Hyracks allows users to express a computation as a DAG of data operators and connectors. Operators operate on partitions of input data and produce partitions of output data, while connectors repartition operators' outputs to make the newly produced partitions available at the consuming operators. We describe the Hyracks end user model, for authors of dataflow jobs, and the extension model for users who wish to augment Hyracks' built-in library with new operator and/or connector types. We also describe our initial Hyracks implementation. Since Hyracks is in roughly the same space as the open source Hadoop platform, we compare Hyracks with Hadoop experimentally for several different kinds of use cases. The initial results demonstrate that Hyracks has significant promise as a next-generation platform for dataintensive applications.

ASTERIX is a new data-intensive storage and computing platform project spanning UC Irvine, UC Riverside, and UC San Diego. In this paper we provide an overview of the ASTERIX project, starting with its main goal-the storage and analCommunicated by: 186 Distrib Parallel Databases (2011) 29: 185-216 ysis of data pertaining to evolving-world models. We describe the requirements and associated challenges, and explain how the project is addressing them. We provide a technical overview of ASTERIX, covering its architecture, its user model for data and queries, and its approach to scalable query processing and data management. AS-TERIX utilizes a new scalable runtime computational platform called Hyracks that is also discussed at an overview level; we have recently made Hyracks available in open source for use by other interested parties. We also relate our work on ASTERIX to the current state of the art and describe the research challenges that we are currently tackling as well as those that lie ahead.

In ligand-based screening, retrosynthesis, and other chemoinformatics applications, one of-ten seeks to search large databases of molecules in order to retrieve molecules that are similar to a given query. With the expanding size of molecular databases, the efficiency and scalability of data structures and algorithms for chemical searches are becoming increasingly important. Remarkably, both the chemoinformatics and information retrieval communities have converged on similar solutions whereby molecules or documents are represented by binary vectors, or fingerprints, indexing their substructures such as labeled paths for molecules and n-grams for text, with the same Jaccard-Tanimoto similarity measure. As a result, similarity search methods from one field can be adapted to the other. Here we adapt recent, state-of-the-art, inverted index methods from information retrieval to speed up similarity searches in chemoinformatics. Our results show a several-fold speed-up improvement over previous methods for both thresh-old searches and top-K searches. We also provide a mathematical analysis that allows one to predict the level of pruning achieved by the inverted index approach, and validate the quality of these predictions through simulation experiments. All results can be replicated using data freely downloadable from http://cdb.ics.uci.edu/.

We propose new adaptive runtime techniques for MapReduce that improve performance and simplify job tuning. We implement these techniques by breaking a key assumption of MapReduce that mappers run in isolation. Instead, our mappers communicate through a distributed meta-data store and are aware of the global state of the job. However, we still preserve the fault-tolerance, scalability, and programming API of MapReduce. We utilize these "situationaware mappers" to develop a set of techniques that make MapReduce more dynamic: (a) Adaptive Mappers dynamically take multiple data partitions (splits) to amortize mapper start-up costs; (b) Adaptive Combiners improve local aggregation by maintaining a cache of partial aggregates for the frequent keys; (c) Adaptive Sampling and Partitioning sample the mapper outputs and use the obtained statistics to produce balanced partitions for the reducers. Our experimental evaluation shows that adaptive techniques provide up to 3× performance improvement, in some cases, and dramatically improve performance stability across the board.