The objectives of this study were to estimate the progress in wheat genetic yield potential, associated with changes in some agronomic traits, under different N rates. Twenty-four cultivars of winter wheat (T. aestivum L.) representing most of the cultivars released in Serbia from 1955 to 2006 were analyzed. The cultivars were grown for four years (2005)(2006)(2007)(2008) in field trails with two levels of agronomic inputs (low nitrogen-N 45 and high nitrogen-N 110 ). Data were collected on 1000-kernel weight, kernels per spike, kernels per square meter, spikes per square meter, plant height, harvest index, heading time and grain yield. Mean difference between the two fertilization levels was 0.44 t ha −1 . The average rate of increase in yield potential per year of release, estimated from the slope, was 41 kg ha −1 year −1 and it was significantly different from zero (P ≤ 0.01). It was 35 kg ha −1 year −1 or 0.55% at the low level of N input, and 46 kg ha −1 year −1 or 0.68% at the high level of N input. This suggests that modern cultivars are better adapted to high N input. Our results suggested that individual contribution of the most of analyzed traits may vary depending on the genotype as well as environmental conditions.

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One of the most important tasks in wheat breeding program is development of high yielding wheat cultivars by crossing the lines with good general combining ability (GCA) and selecting desirable genotypes within its segregating population for grain yield traits. The objective of this study was to estimate the combining ability and gene action involved in the expression of the traits grain weight per spike and grain weight per plant of wheat in F 1 generations, in 5 × 5 half diallel cross of bread wheat varieties (Triticum aestivum L.). The results of applying combining ability analysis indicated that among the parents, genotypes Sara, Pobeda and Renesansa were found to be the best general combiners for the both investigated traits. The best specific crosses for both traits were Sara/Partizanka, Pobeda/Sara, Renesansa/Partizanka, Partizanka/Pesma and Pobeda/Pesma. Most of the specific crosses involved high × high, high × low and low × low general combiners. The results of regression analysis, as well as the analyses of components of genetic variation indicated overdominance in the inheritance of examined traits suggested that selection in later segregating generations may lead to fairly good improvement in these characters.

Background Transcriptomics is being increasingly applied to generate new insight into the interactions between plants and their pathogens. For the wheat yellow (stripe) rust pathogen (Puccinia striiformis f. sp. tritici, Pst) RNA-based sequencing (RNA-Seq) has proved particularly valuable, overcoming the barriers associated with its obligate biotrophic nature. This includes the application of RNA-Seq approaches to study Pst and wheat gene expression dynamics over time and the Pst population composition through the use of a novel RNA-Seq based surveillance approach called “field pathogenomics”. As a dual RNA-Seq approach, the field pathogenomics technique also provides gene expression data from the host, giving new insight into host responses. However, this has created a wealth of data for interrogation. Results Here, we used the field pathogenomics approach to generate 538 new RNA-Seq datasets from Pst-infected field wheat samples, doubling the amount of transcriptomics data available for this important pathosystem. We then analysed these datasets alongside 66 RNA-Seq datasets from four Pst infection time-courses and 420 Pst-infected plant field and laboratory samples that were publicly available. A database of gene expression values for Pst and wheat was generated for each of these 1024 RNA-Seq datasets and incorporated into the development of the rust expression browser (http://www.rust-expression.com). This enables for the first time simultaneous ‘point-and-click’ access to gene expression profiles for Pst and its wheat host and represents the largest database of processed RNA-Seq datasets available for any of the three Puccinia wheat rust pathogens. We also demonstrated the utility of the browser through investigation of expression of putative Pst virulence genes over time and examined the host plants response to Pst infection. Conclusions The rust expression browser offers immense value to the wider community, facilitating data sharing and transparency and the underlying database can be continually expanded as more datasets become publicly available.

The impact of disease outbreaks on the phytosanitary quality of seeds was investigated for two pathosystems: tomato–Xanthomonas vesicatoria and pepper–Xanthomonas euvesicatoria. This study, which was performed in Italy and Serbia, aimed to evaluate the season‐to‐season transmission of phytopathogenic regulated bacteria associated with phytosanitary risks posed by seeds produced in areas where bacterial infections are possible. For each pathosystem, field plots were experimentally inoculated to simulate an initial infection rate of 1%, 5% and 15%. The area under the disease progress curve (AUDPC) was calculated for each field plot, the seeds produced were analysed to determine the contamination level and rate, and the plant‐to‐seed transmission was evaluated by a seedling grow‐out (SGO) assay. To investigate transmission under field conditions, a second‐year experiment was performed, wherein seeds collected from the first year were used to establish new field plots. During the first growing season, AUDPC values were positively correlated with the percentages of initial infection for each pathosystem. Seed contamination levels in pepper ranged from 34 to 100 CFU g−1, and the contamination rate ranged from 1.50% up to 3.17% for X. euvesicatoria, whereas processing and fresh market tomato seeds produced both in Italy and Serbia were not infected by X. vesicatoria. During SGO assays and the second cropping year, no symptoms were observed in either tomato or pepper plants. Therefore, the calculated pepper seed contamination rate for X. euvesicatoria appeared to be less than the threshold necessary to initiate a disease outbreak. Finally, all seeds obtained during the second cropping year were uninfected.

Analyzing 167 non-processed seed samples of wheat, it was found that 145 samples (86.8 %) were contaminated with Tilletia species, while 22 (13.2 %) samples were not contaminated. By using rep-PCR fingerprinting technique, it was found that DNA isolates of T. tritici originated from Serbian wheat samples had 80 % similarity with positive control for T. tritici. One isolate shared similarity of 60% with T. tritici, T. controversa and T. laevis. It was supposed that this isolate belongs to T. bromi. Isolate of T. laevis shared a similarity of 70 % with isolates of T. tritici and T. controversa, while T. walkeri was more than 10 % similar with T. tritici, T. controversa and T. laevis. Although T. controversa and T. tritici had high percent of genetic similarity, they were clustered separately. Our results suggest that rep-PCR fingerprinting could be a useful tool for monitoring presence of morphologically similar Tilletia species in wheat production areas

Monitoring changes in the prevalence of Fusarium species and toxin production is an important tool for the integrated control of Fusarium head blight (FHB). However, methods for the high-throughput screening of Fusarium populations have been developed using isolates with limited geographic origins. In this study, we used species- and trichothecene-specific primers to monitor the F. graminearum species complex (FGSC) originating from Serbia. We also tested the applicability of the primers to the surveillance of FHB. We analyzed two hundred and ten isolates collected from thirty two locations and five winter wheat varieties over a three-year period. Using multiple correspondence analysis (MCA), we investigated associations between Fusarium-damaged kernels (FDK) and location, variety, members of the FGSC, and their predisposition for mycotoxin production. The results revealed that the species-specific primers were not specific for 11% of the F. graminearum population. The primer sets were 98.5%, 95.2%, and 92.4% effective in the multilocus genotyping of Tri7, Tri3, and Tri5 genes, respectively. We found that individual wheat varieties were associated with isolates that could not be characterized using species- and trichothecene-specific primers. Alternaria spp. had a significant influence (p < 0.001) on grain infection with F. graminearum, indicating the necessity to further investigate its impact on the pathogenesis of the F. graminearum clade.

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