The arctic flora is thought to have originated during the late Tertiary, approximately 3 million years ago. Plant migration routes during colonization of the Arctic are currently unknown, and uncertainty remains over where arctic plants survived Pleistocene glaciations. A phylogenetic analysis of chloroplast DNA variation in the purple saxifrage (Saxifraga oppositifolia) indicates that this plant first occurred in the Arctic in western Beringia before it migrated east and west to achieve a circumpolar distribution. The geographical distribution of chloroplast DNA variation in the species supports the hypothesis that, during Pleistocene glaciations, some plant refugia were located in the Arctic as well as at more southern latitudes.

Past research into flooding tolerance and oxygen shortages in plants has been motivated largely by cultivation problems of arable crops. Unfortunately, such species are unsuitable for investigating the physiological and biochemical basis of anoxia-tolerance as selection has reduced any tolerance of anaerobiosis and anaerobic soil conditions that their wild ancestors might have possessed. Restoration of anoxia-tolerance to species that have lost this property is served better by physiological and molecular studies of the mechanisms that are employed in wild species that still possess long-term anoxia-tolerance. Case studies developing these arguments are presented in relation to a selection of crop and wild species. The flooding sensitivity and metabolism of maize is compared in relation to rice in its capacity for anaerobic germination. The sensitivity of potato to flooding is related to its disturbed energy metabolism and inability to maintain functioning membranes under anoxia and postinoxia. By contrast, long-term anoxia-tolerance in the American cranberry [Vaccinium macrocarpon) and the arctic grass species Deschampsia beringensis can be related to the provision and utilization of carbohydrate reserves. Among temperate species, the sweet flag {Acorus calamus) shows a remarkable tolerance of anoxia in both shoots and roots and is also able to mobilize carbohydrate and maintain ATP levels during anoxia as well as preserving membrane lipids against anoxic and post-anoxic injury. Phragmites australis and Spartina altemiflora, although anoxia-tolerant, are both sulphide-sensitive species which can pre-dispose them to the phenomenon of die-back in stagnant, nutrient-rich water. Glyceria maxima adapts to flooding through phenological adaptations with a seasonal metabolic tolerance of anoxia confined to winter and spring which, combined with a facility for root aeration and early spring growth, allows rapid colonization of sites with only shallow flooding. The diversity of responses to flooding in wild plants suggests that, depending on the life strategy and habitat of the species, many different mechanisms may be involved in adapting plants to survive periods of inundation and no one mechanism on its own is adequate for ensuring survival.

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New sequencing technologies allow development of genome-wide markers for any genus of ecological interest, including plant genera such as Betula (birch) that have previously proved difficult to study due to widespread polyploidy and hybridization. We present a de novo reference genome sequence assembly, from 66× short read coverage, of Betula nana (dwarf birch) - a diploid that is the keystone woody species of subarctic scrub communities but of conservation concern in Britain. We also present 100 bp PstI RAD markers for B. nana and closely related Betula tree species. Assembly of RAD markers in 15 individuals by alignment to the reference B. nana genome yielded 44-86k RAD loci per individual, whereas de novo RAD assembly yielded 64-121k loci per individual. Of the loci assembled by the de novo method, 3k homologous loci were found in all 15 individuals studied, and 35k in 10 or more individuals. Matching of RAD loci to RAD locus catalogues from the B. nana individual used for the reference genome showed similar numbers of matches from both methods of RAD locus assembly but indicated that the de novo RAD assembly method may overassemble some paralogous loci. In 12 individuals hetero-specific to B. nana 37-47k RAD loci matched a catalogue of RAD loci from the B. nana individual used for the reference genome, whereas 44-60k RAD loci aligned to the B. nana reference genome itself. We present a preliminary study of allele sharing among species, demonstrating the utility of the data for introgression studies and for the identification of species-specific alleles.

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