Classical simulations of quantum circuits are limited in both space and time when the qubit count is above 50, the realm where quantum supremacy reigns. However, recently, for the low depth circuit with more than 50 qubits, there are several methods of simulation proposed by teams at Google and IBM. Here, we present a scheme of simulation which can extract a large amount of measurement outcomes within a short time, achieving a 64-qubit simulation of a universal random circuit of depth 22 using a 128-node cluster, and 56-and 42-qubit circuits on a single PC. We also estimate that a 72-qubit circuit of depth 23 can be simulated in about 16 h on a supercomputer identical to that used by the IBM team. Moreover, the simulation processes are exceedingly separable, hence parallelizable, involving just a few inter-process communications. Our work enables simulating more qubits with less hardware burden and provides a new perspective for classical simulations.
The instructive capabilities of extracellular matrix–inspired materials for osteoprogenitor differentiation have sparked interest in understanding modulation of other cell types within the bone regenerative microenvironment. We previously demonstrated that nanoparticulate mineralized collagen glycosaminoglycan (MC-GAG) scaffolds efficiently induced osteoprogenitor differentiation and bone healing. In this work, we combined adenovirus-mediated delivery of osteoprotegerin (AdOPG), an endogenous anti-osteoclastogenic decoy receptor, in primary human mesenchymal stem cells (hMSCs) with MC-GAG to understand the role of osteoclast inactivation in augmentation of bone regeneration. Simultaneous differentiation of osteoprogenitors on MC-GAG and osteoclast progenitors resulted in bidirectional positive regulation. AdOPG expression did not affect osteogenic differentiation alone. In the presence of both cell types, AdOPG-transduced hMSCs on MC-GAG diminished osteoclast-mediated resorption in direct contact; however, osteoclast-mediated augmentation of osteogenic differentiation was unaffected. Thus, the combination of OPG with MC-GAG may represent a method for uncoupling osteogenic and osteoclastogenic differentiation to augment bone regeneration.
As a biocompatible and low cytotoxic nanomaterial, graphene oxide (GO) has captured tremendous interests in tissue engineering. However, little is known about the behavior of dental stem cells on GO. This study was to evaluate the bioactivity of human periodontal ligament stem cells (PDLSCs) on GO coated titanium (GO-Ti) substrate in vitro as compared to sodium titanate (Na-Ti) substrate. By scanning electron microscope (SEM), confocal laser scanning microscope (CLSM), methylthiazol tetrazolium (MTT) assay, alkaline phosphatase (ALP) activity, quantitative real-time polymerase chain reaction (qRT-PCR) and western blot analysis, we investigated the attachment, morphology, proliferation and osteogenic differentiation of PDLSCs on these two substrates. When seeded on GO-Ti substrate, PDLSCs exhibited significantly higher proliferation rate, ALP activity and up-regulated gene expression level of osteogenesis-related markers of collagen type I (COL-I), ALP, bone sialoprotein (BSP), runt related transcription factor 2 (Runx2) and osteocalcin (OCN) compared with those on Na-Ti substrate. Moreover, GO promoted the protein expression of BSP, Runx2 and OCN. These findings suggest that the combination of GO and PDLSCs provides a promising construct for regenerative dentistry.
Although experiments can offer some fingerprints of the atomic structure of glasses (coordination numbers, pair distribution function, etc.), atomistic simulations are often required to directly access the structure itself (i.e., the positions of the atoms). On the one hand, molecular dynamics (MD) simulations can be used to generate by quenching a liquid-but MD simulations remain plagued by extremely high cooling rates. On the other hand, reverse Monte Carlo (RMC) modeling bypasses the melt-quenching route-but RMC often yields non-unique glass structures. Here, we adopt the force-enhanced atomic refinement (FEAR) method to overcome these limitations and decipher the atomic structure of a sodium silicate glass. We show that FEAR offers an unprecedented description of the atomic structure of sodium silicate. The FEAR-generated glass structure simultaneously exhibits (i) enhanced agreement with experimental neutron diffraction data and (ii) higher energetic stability as compared to those generated by MD or RMC. This result allows us to reveal new insights into the atomic structure of sodium silicate glasses. Specifically, we show that sodium silicate glasses exhibit a more ordered medium-range order structure than previously suggested by MD simulations. These results pave the way toward an increased ability to accurately describe the atomic structure of glasses.
The instructive capabilities of extracellular matrix components in progenitor cell differentiation have recently generated significant interest in the development of bioinspired materials for regenerative applications. Previously, a correlation was described between the osteogenic capabilities of nanoparticulate mineralized collagen glycosaminoglycan scaffolds (MC-GAG) and an autogenous activation of small mothers against decapentaplegic ( Smad1/5) in the canonical bone morphogenetic protein receptor (BMPR) pathway with a diminished extracellular signal regulated kinase 1/2 (ERK1/2) activation when compared to nonmineralized collagen glycosaminoglycan scaffolds (Col-GAG). This work utilizes a canonical BMPR inhibitor (dorsomorphin homologue 1, DMH1) and an inhibitor of the mitogen activated protein kinase/ERK kinase (MEK)/(ERK) cascade (PD98059) to characterize the necessity of each pathway for osteogenesis. While DMH1 inhibits runt-related transcription factor 2 (Runx2) and bone sialoprotein II (BSPII) gene expression of primary human mesenchymal stem cells (hMSCs) on MC-GAG, PD98059 inhibits BSPII expression on Col-GAG independent of Runx2 expression. DMH1 inhibits mineralization on both Col-GAG and MC-GAG, however, PD98059 only inhibits mineralization on Col-GAG. DMH1 inhibits both Smad1/5 phosphorylation and Runx2 protein expression, whereas PD98059 inhibits ERK1/2 and c-Jun amino-terminal kinase 1/2 (JNK1/2) phosphorylation without affecting Runx2. Thus, activation of the canonical BMPR signaling is necessary for osteogenic differentiation and mineralization of hMSCs on Col-GAG or MC-GAG. The MEK/ERK cascade, intimately tied to JNK activation, is necessary for Runx2-independent osteogenesis on Col-GAG, while completely dispensable in osteogenesis on MC-GAG.
When exposed to water, silicate glasses and minerals can form a hydrated gel surface layer concurrent with a decrease in their dissolution kinetics—a phenomenon known as the “passivation effect.” However, the atomic-scale origin of such passivation remains debated. Here, based on reactive molecular dynamics simulations, we investigate the hydration of a series of modified borosilicate glasses with varying compositions. We show that, upon the aging of the gel, the passivation effect manifests itself as a drop in hydrogen mobility. Nevertheless, only select glass compositions are found to exhibit some passivation. Based on these results, we demonstrate that the passivation effect cannot be solely explained by the repolymerization of the hydrated gel upon aging. Rather, we establish that the propensity for passivation is intrinsically governed by the reorganization of the medium-range order structure of the gel upon aging and, specifically, the formation of small silicate rings that hinder water mobility.
The ability of the extracellular matrix (ECM) to direct cell fate has generated the potential for developing a materials‐only strategy for tissue regeneration. Previously, we described a nanoparticulate mineralized collagen glycosaminoglycan (MC‐GAG) material that efficiently induced osteogenic differentiation of human mesenchymal stem cells (hMSCs) and calvarial bone healing without exogenous growth factors or progenitor cell expansion. In this work, we evaluated the interactions between MC‐GAG and primary human osteoclasts (hOCs). In the absence of hMSCs, mineralized Col‐GAG materials directly inhibited hOC viability, proliferation, and resorption in contrast to nonmineralized Col‐GAG, which demonstrated a modest inhibition of resorptive activity only. Cocultures containing differentiating hMSCs with hOCs demonstrated increased hOC‐mediated resorption only on Col‐GAG while MC‐GAG cocultures continued to inhibit resorption. Unlike Col‐GAG, hMSCs on MC‐GAG expressed increased amounts of osteoprotegerin (OPG) protein, the major endogenous osteoclast inhibitor. Interestingly, OPG expression was found to be antagonized by small mothers against decapentaplegic1/5 (Smad1/5) phosphorylation, an obligate pathway for osteogenic differentiation of hMSCs on MC‐GAG, and potentiated by extracellular signal‐regulated kinase (ERK1/2) phosphorylation. Collectively, these results suggested that the MC‐GAG material both directly inhibited the osteoclast viability, proliferation, and resorptive activity as well as induced hMSCs to secrete osteoprotegerin, an antiosteoclastogenic factor, via a signalling pathway distinct from osteogenic differentiation.
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