Peroxisomal protein import is essentially different to the translocation of proteins into other organelles. The molecular mechanisms by which completely folded or even oligomerized proteins cross the peroxisomal membrane remain to be disclosed. The identification of a water-filled pore that is mainly constituted by Pex5 and Pex14 led to the assumption that proteins are translocated through a large, probably transient, protein-conducting channel. Here, we will review the work that led to the identification of this translocation pore. In addition, we will discuss the main biophysical features of the pore and compare it with other protein–translocation channels.

Chloroplasts and mitochondria are unique endosymbiotic cellular organelles surrounded by two membranes. Essential metabolic networking between these compartments and their hosting cells requires the exchange of a large number of biochemical pathway intermediates in a directed and coordinated fashion across their inner and outer envelope membranes. Here, we describe the identification and functional characterization of a highly specific, regulated solute channel in the outer envelope of chloroplasts, named OEP40. Loss of OEP40 function in Arabidopsis thaliana results in early flowering under cold temperature. The reconstituted recombinant OEP40 protein forms a high conductance ␤-barrel ion channel with subconductant states in planar lipid bilayers. The OEP40 channel is slightly cation-selective P K؉ /P Cl؊ ≈ 4:1 and rectifying (ı ᠬ/ı ᠭ Х 2) with a slope conductance of Ḡ max Х 690 picosiemens. The OEP40 channel has a restriction zone diameter of Х1.4 nm and is permeable for glucose, glucose 1-phosphate and glucose 6-phosphate, but not for maltose. Moreover, channel properties are regulated by trehalose 6-phosphate, which cannot permeate. Altogether, our results indicate that OEP40 is a "glucose-gate" in the outer envelope membrane of chloroplasts, facilitating selective metabolite exchange between chloroplasts and the surrounding cell.The plant cell is highly compartmentalized, containing at least seven different types of organelles that are involved in metabolism and cellular maintenance. In many cases, metabolic pathways and other cellular processes are not confined to one organelle but require the cooperation of several of them, e.g. in protein secretion or photorespiration. Metabolic networking between compartments thus requires directed and coordinated exchange of biochemical pathway intermediates across organellar membranes (1). Chloroplasts and mitochondria are unique endosymbiotic cellular organelles, which like their prokaryotic ancestors are surrounded by two membranes. The inner membrane of both organelles is derived from the bacterial plasma membrane. Surprisingly, also the outer membrane largely originated from and still resembles the outer membrane of the Gram-negative-like bacterial endosymbiont (2). In the inner chloroplast envelope membrane (IE), 5 numerous metabolite transporter proteins were identified and characterized to large detail with respect to their physiological impact and molecular mechanisms (3). These transporters are hydrophobic, polytopic, and mainly ␣-helical membrane proteins facilitating the exchange of metabolic precursors, intermediates, and final products between plastids and the cytoplasm. In contrast, the characteristic channels of the outer membranes in bacteria, chloroplasts as well as mitochondria, span the membrane in the form of ␤-strands that are organized to form a barrel-like pore structure (4). Proteins sharing this three-dimensional arrangement were implied in a variety of functions, including protein import (5). In addition, solute pores like the voltage-dependen...

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Artificial bilayer containing reconstituted ion channels, transporters and pumps serve as a well-defined model system for electrophysiological investigations of membrane protein structure–function relationship. Appropriately constructed microchips containing horizontally oriented bilayers with easy solution access to both sides provide, in addition, the possibility to investigate these model bilayer membranes and the membrane proteins therein with high resolution fluorescence techniques up to the single-molecule level. Here, we describe a bilayer microchip system in which long-term stable horizontal free-standing and hydrogel-supported bilayers can be formed and demonstrate its prospects particularly for single-molecule fluorescence spectroscopy and high resolution fluorescence microscopy in probing the physicochemical properties like phase behavior of the bilayer-forming lipids, as well as in functional studies of membrane proteins.

About 50% of the cellular proteins have to be transported into or across cellular membranes. This transport is an essential step in the protein biosynthesis. In eukaryotic cells secretory proteins are transported into the endoplasmic reticulum before they are transported in vesicles to the plasma membrane. Almost all proteins of the endosymbiotic organelles chloroplasts and mitochondria are synthesized on cytosolic ribosomes and posttranslationally imported. Genetic, biochemical and biophysical approaches led to rather detailed knowledge on the composition of the translocon-complexes which catalyze the membrane transport of the preproteins. Comprehensive concepts on the targeting and membrane transport of polypeptides emerged, however little detail on the molecular nature and mechanisms of the protein translocation channels comprising nanopores has been achieved. In this paper we will highlight recent developments of the diverse protein translocation systems and focus particularly on the common biophysical properties and functions of the protein conducting nanopores. We also provide a first analysis of the interaction between the genuine protein conducting nanopore Tom40(SC) as well as a mutant Tom40(SC) (S(54 --> E) containing an additional negative charge at the channel vestibule and one of its native substrates, CoxIV, a mitochondrial targeting peptide. The polypeptide induced a voltage-dependent increase in the frequency of channel closure of Tom40(SC) corresponding to a voltage-dependent association rate, which was even more pronounced for the Tom40(SC) S54E mutant. The corresponding dwelltime reflecting association/transport of the peptide could be determined with t(off) approximately = 1.1 ms for the wildtype, whereas the mutant Tom40(SC) S54E displayed a biphasic dwelltime distribution (t(off)(-1) approximately = 0.4 ms; t(off)(-2) approximately = 4.6 ms).

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