We have extended a conventional photosynthesis model to simulate field and laboratory measurements of chlorophyll fluorescence at the leaf scale. The fluorescence paramaterization is based on a close nonlinear relationship between the relative light saturation of photosynthesis and nonradiative energy dissipation in plants of different species. This relationship diverged only among examined data sets under stressed (strongly light saturated) conditions, possibly caused by differences in xanthophyll pigment concentrations. The relationship was quantified after analyzing data sets of pulse amplitude modulated measurements of chlorophyll fluorescence and gas exchange of leaves of different species exposed to different levels of light, CO2, temperature, nitrogen fertilization treatments, and drought. We used this relationship in a photosynthesis model. The coupled model enabled us to quantify the relationships between steady state chlorophyll fluorescence yield, electron transport rate, and photosynthesis in leaves under different environmental conditions.Key PointsLight saturation of photosynthesis determines quenching of leaf fluorescenceWe incorporated steady state leaf fluorescence in a photosynthesis model

Global mapping of terrestrial vegetation fluorescence from space has recently been accomplished with high spectral resolution (&nu;/&Delta;&nu; > 35 000) measurements from the Japanese Greenhouse gases Observing SATellite (GOSAT). These data are of interest because they can potentially provide global information on the functional status of vegetation including light-use efficiency and global primary productivity that can be used for global carbon cycle modeling. Quantifying the impact of fluorescence on the O₂-A band is important as this band is used for photon pathlength characterization in cloud- and aerosol-contaminated pixels for trace-gas retrievals including CO₂. Here, we examine whether fluorescence information can be derived from space using potentially lower-cost hyperspectral instrumentation, i.e., more than an order of magnitude less spectral resolution (&nu;/&Delta;&nu; ~ 1600) than GOSAT, with a relatively simple algorithm. We discuss laboratory measurements of fluorescence near one of the few wide and deep solar Fraunhofer lines in the long-wave tail of the fluorescence emission region, the calcium (Ca) II line at 866 nm that is observable with a spectral resolution of ~0.5 nm. The filling-in of the Ca II line due to additive signals from various atmospheric and terrestrial effects, including fluorescence, is simulated. We then examine filling-in of this line using the SCanning Imaging Absorption spectroMeter for Atmospheric CHartographY (SCIAMACHY) satellite instrument. In order to interpret the satellite measurements, we developed a general approach to correct for various instrumental artifacts that produce false filling-in of solar lines in satellite measurements. The approach is applied to SCIAMACHY at the 866 nm Ca II line and to GOSAT at 758 and 770 nm on the shoulders of the O₂-A feature where there are several strong solar Fraunhofer lines that are filled in primarily by vegetation fluorescence. Finally, we compare temporal and spatial variations of SCIAMACHY additive signals with those of GOSAT and the Enhanced Vegetation Index (EVI) from the MODerate-resolution Imaging Spectroradiometer (MODIS). Although the derived additive signals from SCIAMACHY are extremely weak at 866 nm, their spatial and temporal variations are consistent with chlorophyll <i>a</i> fluorescence or another vegetation-related source. We also show that filling-in occurs at 866 nm over some barren areas, possibly originating from luminescent minerals in rock and soil

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Abstract:The utilization of remotely sensed observations for light use efficiency (LUE) and tower-based gross primary production (GPP) estimates was studied in a USDA cornfield. Nadir hyperspectral reflectance measurements were acquired at canopy level during a collaborative field campaign conducted in four growing seasons. The Photochemical Reflectance Index (PRI) and solar induced chlorophyll fluorescence (SIF), were derived. SIF retrievals were accomplished in the two telluric atmospheric oxygen OPEN ACCESSRemote Sens. 2013, 5 6858 absorption features centered at 688 nm (O 2 -B) and 760 nm (O 2 -A). The PRI and SIF were examined in conjunction with GPP and LUE determined by flux tower-based measurements. All of these fluxes, environmental variables, and the PRI and SIF exhibited diurnal as well as day-to-day dynamics across the four growing seasons. Consistent with previous studies, the PRI was shown to be related to LUE (r 2 = 0.54 with a logarithm fit), but the relationship varied each year. By combining the PRI and SIF in a linear regression model, stronger performances for GPP estimation were obtained. The strongest relationship (r 2 = 0.80, RMSE = 0.186 mg CO 2 /m 2 /s) was achieved when using the PRI and SIF retrievals at 688 nm. Cross-validation approaches were utilized to demonstrate the robustness and consistency of the performance. This study highlights a GPP retrieval method based entirely on hyperspectral remote sensing observations.

Current broadband sensors are not capable of separating the initial stages of forest damage. The current investigation evaluates the potential of hyperspectral data for detecting the initial stages of forest damage at the canopy level in the Norway spruce (Picea abies (L.) Karst) forests of Czech Republic. Hyperspectral canopy reflectance imagery and foliar samples were acquired contemporaneously for 23 study sites in August 1998. The sites were selected along an air pollution gradient to represent the full range of damage conditions in even-aged spruce forests. The changes in canopy and foliar reflectance, chemistry and pigments associated with forest damage were established. The potential of a large number of spectral indices to identify initial forest damage was determined. Canopy hyperspectral data were able to separate healthy from initially damaged canopies, and therefore provided an improved capability for assessment of forest physiology as compared to broadband systems. The 673-724 nm region exhibited maximum sensitivity to initial damage. The nine spectral indices having the highest potential as indicators of the initial damage included: three simple band ratios, two derivative indices, two modelled red-edge parameters and two normalized bands. The sensitivity of these indices to damage was explained primarily by their relationship to foliar structural chemical compounds, which differed significantly by damage class.

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