A major challenge in biology is to understand how phylogeny, diet, and environment shape the mammalian gut microbiome. Yet most studies of nonhuman microbiomes have relied on relatively coarse dietary categorizations and have focused either on individual wild populations or on captive animals that are sheltered from environmental pressures, which may obscure the effects of dietary and environmental variation on microbiome composition in diverse natural communities. We analyzed plant and bacterial DNA in fecal samples from an assemblage of 33 sympatric large-herbivore species (27 native, 6 domesticated) in a semiarid East African savanna, which enabled high-resolution assessment of seasonal variation in both diet and microbiome composition. Phylogenetic relatedness strongly predicted microbiome composition (r = 0.91) and was weakly but significantly correlated with diet composition (r = 0.20). Dietary diversity did not significantly predict microbiome diversity across species or within any species except kudu; however, diet composition was significantly correlated with microbiome composition both across and within most species. We found a spectrum of seasonal sensitivity at the diet−microbiome nexus: Seasonal changes in diet composition explained 25% of seasonal variation in microbiome composition across species. Species’ positions on (and deviations from) this spectrum were not obviously driven by phylogeny, body size, digestive strategy, or diet composition; however, domesticated species tended to exhibit greater diet−microbiome turnover than wildlife. Our results reveal marked differences in the influence of environment on the degree of diet−microbiome covariation in free-ranging African megafauna, and this variation is not well explained by canonical predictors of nutritional ecology.
Medicinal plants are vital sources of easily accessible remedy used in the countryside healthcare system. This study aimed to find and make record of plants that are used for medicinal therapy by three communities living in Cherangani Hills. So far no single study has documented medicinal plants as a whole in the area. Ethnobotanical data were obtained through interviewing informants using semi-structured questionnaires and extracting information from journals and books. Descriptive statistical analysis was applied to describe the data. Overall 296 plant species from 80 families and 191 genera were identified. Asteraceae family was the most dominant, representing 10.7% of the total plant species recorded. Roots (35.9%) represented the most commonly used parts of the plant. The commonly used method of preparation was decoction (54.9%). The reported diseases were classified into 14 diverse ailment groups out of the 81 health conditions on their underlying user reports. Rural communities in Cherangani Hills are rich sources of plants with medicinal properties. Therapeutic uses of the compiled plants provide basic information that can aid scientists to conduct additional research dedicated to conservation of species and pharmacological studies of species with the greatest significance.
There are 13 files that provide location, rainfall, habitat, vegetation, and animal data from the UHURU experiment. There are several column headings that identify the scale and location of sampling, appearing in many of the 13 datasets that follow.
With c. 2,000 species, Euphorbia is one of the largest angiosperm genera, yet a lack of chloroplast genome (plastome) resources impedes a better understanding of its evolution. In this study, we assembled and annotated 28 plastomes from Euphorbiaceae, of which 15 were newly sequenced. Phylogenomic and comparative analyses of 22 plastome sequences from all four recognized subgenera within Euphorbia revealed that plastome length in Euphorbia is labile, presenting a range of variation c. 42 kb. Large-scale expansions of the inverted repeat (IR) region were identified, and at the extreme opposite, the near-complete loss of the IR region (with only 355 bp left) was detected for the first time in Euphorbiaceae. Other structural variations, including gene inversion and duplication, and gene loss/pseudogenization, were also observed. We screened the most promising molecular markers from both intergenic and coding regions for phylogeny-based utilities, and estimated maximum likelihood and Bayesian phylogenies from four datasets including whole plastome sequences. The monophyly of Euphorbia is supported, and its four subgenera are recovered in a successive sister relationship. Our study constitutes the first comprehensive investigation on the plastome structural variation in Euphorbia and it provides resources for phylogenetic research in the genus, facilitating further studies on its taxonomy, evolution, and conservation.
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