We present a scheme for laser cooling applicable for an extremely dilute sample of magnetically trapped antihydrogen atoms(H). Exploiting and controlling the dynamical coupling between thē H's motional degrees of freedom in a magnetic trap, three-dimensional cooling can be achieved from Doppler cooling on one dimension using the 1s 1/2 − 2p 3/2 transition. The lack of three-dimensional access to the trappedH and the nearly separable nature of the trapping potential leads to difficulties in cooling. Using realistic models for the spatial variation of the magnetic fields, we find that it should be possible to cool theH's to ∼ 20 mK even with these constraints.
Rieske nonheme iron oxygenases use two metallocenters,
a Rieske-type
[2Fe-2S] cluster and a mononuclear iron center, to catalyze oxidation
reactions on a broad range of substrates. These enzymes are widely
used by microorganisms to degrade environmental pollutants and to
build complexity in a myriad of biosynthetic pathways that are industrially
interesting. However, despite the value of this chemistry, there is
a dearth of understanding regarding the structure–function
relationships in this enzyme class, which limits our ability to rationally
redesign, optimize, and ultimately exploit the chemistry of these
enzymes. Therefore, in this work, by leveraging a combination of available
structural information and state-of-the-art protein modeling tools,
we show that three “hotspot” regions can be targeted
to alter the site selectivity, substrate preference, and substrate
scope of the Rieske oxygenase p-toluenesulfonate
methyl monooxygenase (TsaM). Through mutation of six to 10 residues
distributed between three protein regions, TsaM was engineered to
behave as either vanillate monooxygenase (VanA) or dicamba monooxygenase
(DdmC). This engineering feat means that TsaM was rationally engineered
to catalyze an oxidation reaction at the meta and ortho positions of an aromatic substrate, rather than its
favored native para position, and that TsaM was redesigned
to perform chemistry on dicamba, a substrate that is not natively
accepted by the enzyme. This work thus contributes to unlocking our
understanding of structure–function relationships in the Rieske
oxygenase enzyme class and expands foundational principles for future
engineering of these metalloenzymes.
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Radical S-adenosyl-L-methionine (SAM) enzymes are found in all domains of life and catalyze a wide range of biochemical reactions. Recently, an organometallic intermediate, Ω, has been experimentally implicated in the 5′-deoxyadenosyl radical generation mechanism of the radical SAM superfamily. In this work, we employ broken-symmetry density functional theory to evaluate several structural models of Ω. The results show that the calculated hyperfine coupling constants (HFCCs) for the proposed organometallic structure of Ω are inconsistent with the experiment. In contrast, a near-attack conformer of SAM bound to the catalytic [4Fe−4S] cluster, in which the distance between the unique iron and SAM sulfur is ∼3 Å, yields HFCCs that are all within 1 MHz of the experimental values. These results clarify the structure of the ubiquitous Ω intermediate and suggest a paradigm shift reversal regarding the mechanism of SAM cleavage by members of the radical SAM superfamily.
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