A PCR-denaturing gradient gel electrophoresis (DGGE) method was used to examine on-farm sources of Clostridium cluster I strains in four dairy farms over 2 years. Conventional microbiological analysis was used in parallel to monitor size of clostridial populations present in various components of the milk production chain (soil, forage, grass silage, maize silage, dry hay, and raw milk). PCR amplification with Clostridium cluster I-specific 16S rRNA gene primers followed by DGGE separation yielded a total of 47 operational taxonomic units (OTUs), which varied greatly with respect to frequency of occurrence. Some OTUs were found only in forage, and forage profiles differed according to farm location (southern or northern Québec). More clostridial contamination was found in maize silage than in grass silage. Milk represented a potential environment for certain OTUs. No OTU was milk specific, indicating that OTUs originated from other environments. Most (83%) of the OTUs detected in raw milk were also found in grass or maize silage. Milk DGGE profiles differed according to farm and sampling year and fit into two distinct categories. One milk profile category was characterized by the presence of a few dominant OTUs, the presence of which appeared to be more related to farm management than to feed contamination. OTUs were more varied in the second profile category. The identities of certain OTUs frequently found in milk were resolved by cloning and sequencing. Clostridium disporicum was identified as an important member of clostridial populations transmitted to milk. Clostridium tyrobutyricum was consistently found in milk and was widespread in the other farm environments examined.

Acetosyringone, a phenolic inducer of the virulence (vir) genes of Agrobacterium tumefaciens, inhibited the growth of the nopaline-type strains T37 and C58 incubated under acidic conditions. In the course of a 6-day incubation with acetosyringone, avirulent clones were produced in different proportions by strains T37 and C58 and also by a spontaneous variant of strain C58, denominated C58F. The proportion of avirulent clones in acetosyringone-treated cultures often exceeded 50%o for strains T37 and C58F and was of the order of 1% for strain C58. Control cultures not exposed to acetosyringone did not yield avirulent clones. Two other vir inducers, sinapinic acid and syringaldehyde, also inhibited growth and promoted accumulation of avirulent clones in cultures of strains C58F and T37. On the other hand, various acetosyringone analogs reported not to induce the vir genes did not act as growth inhibitors. All of the T37 and most of the C58F avirulent clones examined still carried a Ti plasmid. In all instances examined, avirulent clones still carrying a Ti plasmid were mutated in this plasmid. Mutants of strain C58F lacked the capacity to induce a virB::lacZ fusion in the presence of acetosyringone.The causal agent of crown gall, Agrobacterium tumefaciens, infects plant wounds where it detects the presence of specific compounds of plant origin. The virulence (vir) genes present on the Ti plasmids ofA. tumefaciens are then induced. Expression of the vir genes in the bacterium leads to the transfer to host plant cells of a particular region of the Ti plasmids, called the transferred (T-) DNA. This DNA of bacterial origin becomes stably integrated into the nuclear genome of the plant cells.

Little is known about the effect of the host on the genetic stability of bacterial plant pathogens. Crown gall, a plant disease caused by Agrobacterium tumefaciens, may represent a useful model to study this effect. Indeed, our previous observations on the natural occurrence and origin of nonpathogenic agrobacteria suggest that the host plant might induce loss of pathogenicity in populations of A. tumefaciens. Here we report that five different A. tumefaciens strains initially isolated from apple tumors produced up to 99% nonpathogenic mutants following their reintroduction into axenic apple plants. Two of these five strains were also found to produce mutants on pear and/or blackberry plants. Generally, the mutants of the apple isolate D10B/87 were altered in the tumor-inducing plasmid, harboring either deletions in this plasmid or point mutations in the regulatory virulence gene virG. Most of the mutants originating from the same tumor appeared to be of clonal origin, implying that the host plants influenced agrobacterial populations by favoring growth of nonpathogenic mutants over that of wild-type cells. This hypothesis was confirmed by coinoculation of apple rootstocks with strain D10B/87 and a nonpathogenic mutant.The virulence (vir) and transferred (T) regions of Agrobacterium tumefaciens Ti plasmids contain genes directly involved in plant transformation. Expression of the vir genes by the bacterium is induced through the action of the virA-virG twocomponent regulatory system in response to plant phenolic compounds such as acetosyringone. The T-DNA, produced from the T region at the direction of the vir genes, becomes integrated into plant chromosomal DNA, where it determines the synthesis of plant growth hormones responsible for crown gall tumor development. The T-DNA also confers on tumor cells the capacity to produce unusual metabolites called opines. One of these opines, nopaline, is synthesized through the reductive condensation of arginine and ␣-ketoglutaric acid. Other Ti plasmid-encoded genes, which are not transferred to plant cells, enable the bacterial pathogen to utilize opines for growth and tumor colonization (for reviews, see references 5, 6, and 20). In spite of the enhanced colonization potential associated with expression of the opine catabolic genes, pathogenic Agrobacterium strains are difficult to recover from certain types of tumors in which nonpathogenic, opine-utilizing agrobacteria often prevail (4, 14). To account for the frequent occurrence of nonpathogenic agrobacteria, it is proposed here that some plant infections with A. tumefaciens result in the modification of the bacterial genome. Conceivably, nonpathogenic mutants produced by A. tumefaciens in association with the host plant could be altered either in the vir or T region of the Ti plasmid or in the chromosome. Chromosomal genes that are required for efficient plant transformation include chvE, which encodes a protein that potentiates the effect of plant phenolic compounds on vir gene induction (11).Our recent observatio...

A simple method based upon the use of a Tn5 derivative, Tn5-Lux, has been devised for the introduction and stable expression of the character of bioluminescence in a variety of gram-negative bacteria. In Tn5-Lux, the luxAB genes of Vibrio harveyi encoding luciferase are inserted on a SalI--BglII fragment between the kanamycin resistance (Kmr) gene and the right insertion sequence. The transposon derivative was placed on a transposition suicide vehicle by in situ recombination with the Tn5 suicide vector pGS9, to yield pDB30. Mating between Escherichia coli WA803 (pDB30) and a strain from our laboratory, Pseudomonas sp. RB100C, gave a Kmr transfer frequency of 10(-6) per recipient, a value 10 times lower than that obtained with the original suicide vehicle pGS9. Tn5-Lux was also introduced by insertion mutagenesis in other strains of gram-negative soil bacteria. The bioluminescence marker was expressed in the presence of n-decanal, and was monitored as chemiluminescence in a liquid scintillation counter. The recorded light intensities were fairly comparable among the strains, and ranged between 0.2 to 1.8 x 10(6) cpm for a cell density of 10(3) colony forming units/ml. Nodules initiated by bioluminescent strains of Rhizobium leguminosarum on two different hosts were compared for intensity of the bioluminescence they produced.

Bacteria were isolated from soil and crown gall tumors by selection in minimal medium with an opine, such as succinamopine or mannopine, as the sole carbon source. The isolates were characterized for the pattern of opine utilization and identified. They were classified as mannityl opine or imino diacid utilizers and exhibited specificity of utilization similar to that described previously for Agrobacterium species. A minority of isolates were gram negative and were identified as Agrobacterium or Pseudomonas species; most were gram positive and belonged to the coryneform group. These results indicate that any specific effect of opines on the ecology of Agrobacterium tumefaciens is modulated by activities of other types of soil- and plant-associated bacteria.

Microorganisms utilizing an opine as the sole carbon source were recovered from crown gall tumors, soil, and surface-disinfected potato tubers. The effect of the opines octopine, nopaline, succinamopine, and mannopine as selective substrates was compared with that of the auxin indoleacetic acid. Selection on octopine and indoleacetic acid favored the fluorescent pseudomonads, whereas mannopine allowed the frequent recovery of agrobacteria. Coryneforms which utilized succinamopine or mannopine were detected in soil, but not in tumors. Fungi growing on succinamopine or mannopine and a mannopine-utilizing Pseudomonas putida were isolated from tumor and soil, respectively.

Agrobacterium tumefaciens C58F is a variant of strain C58 which generates a high proportion of avirulent mutants in the presence of the virulence (vir) gene inducer acetosyringone. These mutants are altered in the Ti plasmid and do not respond to the acetosyringone signal (C. Fortin, E. W. Nester, and P. Dion, J. Bacteriol. 174:5676-5685, 1992). The physical organization of the Ti plasmid was compared in strain C58 and its variant. One feature distinguishing pTiC58F from its parent plasmid was the presence of the insertion element IS426. Three copies of this element were detected in the strain C58 chromosome, whereas two additional copies were found in strain C58F, including one copy in the Ti plasmid. This particular copy of IS426 was associated with the region of arginine and nopaline catabolism of pTiC58F. Most of the avirulent mutants recovered following growth of strain C58F in the presence of acetosyringone were complemented by clones carrying either virA or virG. Element IS426 was no longer found in the arginine and nopaline catabolism region of the Ti plasmids from the virA and virG mutants, but it resided in the particular KpnI fragment containing the modified vir locus.Behavior of a strain C58F derivative, which was inactivated in a chromosomal component required for the response to acetosyringone, was consistent with the possibility that vir gene induction is essential to the massive production of avirulent mutants.The causal agent of crown gall disease, Agrobacterium tumefaciens, infects plant wounds where it detects the presence of specific compounds of plant origin. These compounds, which include acetosyringone and various analogs, induce the virulence (vir) genes carried by A. tumefaciens tumor-inducing (Ti) plasmids. Expression of the vir genes leads to the transfer to host plant cells of part of the Ti plasmids. The transferred DNA (T-DNA) becomes stably integrated in the nuclear genome of the plant, where it directs hormone-independent growth and the production of specific secondary metabolites, called opines (3,18). A nontransferred region on the Ti plasmids confers on the bacterium the ability to utilize opines as the sole carbon and nitrogen source. Octopine and nopaline are two particular types of opines (9).The vir region of A. tumefaciens comprises at least six operons which are required for full virulence. The vir operons virA and virG code for a two-component regulatory system (23, 37) responding to acetosyringone and other phenolic inducers (31). Chromosomal genes are also involved in tumorigenesis. One of these, the chvE gene, encodes a periplasmic galactose-binding protein which interacts with VirA to stimulate vir gene induction in the presence of sugars and low concentrations of acetosyringone (17).The various biological activities ofA. tumefaciens, including plant cell transformation, can be influenced by endogenous insertion sequence (IS) elements. Insertion of element IS66 in the tms region of T-DNA from pTiA6 results in an attenuated phenotype of this octopine-type strain (2, ...

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