We tested the hypothesis that activity rates can represent a large and variable component of a fishˈs energy budget. We executed five experiments between July 15 and August 2, 1991, to estimate growth, consumption, and activity rates of five young‐of‐the‐year brook trout Salvelinus fontinalis kept in field enclosures. Mean fish wet weight decreased from 3.47 to 2.89 g during our study. This represented a total loss of 3,544 cal (all fish combined). Consumption rates averaged 0.18 g dry·100 g wet–1·d–1. The total quantity of food consumed by the fish inside the enclosure ranged from 112.9 to 188.8 cal·d–1. Median swimming speed ranged from 3.9 to 7.9 cm·s–1. Energetic costs associated with spontaneous swimming (all fish combined) ranged from 94.0 to 498.1 cal·d–1. Spontaneous activity metabolic rate (standard metabolism + net activity rate) represented 1.6–3.8 times the costs associated with standard metabolism. Our study supported the hypothesis that activity rates can be a large and variable component of a fishˈs energy budget.

We investigated the impact of turbidity, food density and parasites on ingestion and growth rates of rainbow smelt larvae Osmerus mordax. These 3 variables were selected because of their potential to substantially ~nfluence the feeding success, growth, and the subsequent survival of smelt larvae. A laboratory experiment was first performed to evaluate, in turbulent conditions, the combined effects of turbidity and food density on the ingestion and growth rates of smelt larvae. A f~eld survey of the gut contents of larval smelt was conducted to directly estlmate ingestion rates in 2 different regions of the St. Lawrence estuarine turbidity maximum (ETM) exhibiting different levels of turbidity but otherwise sharing similar environmental conditions. This study demonstrated that lower energetic costs are incurred by larvae that exploit similar feeding conditions at higher turbidities. Larval rainbow smelt in the ETM fed during the coincidence of dayllght hours and flooding tide. Cestode parasites (genus Protocephalus) were found in the digestive tract of 38% of the larvae collected in the ETM. Parasitised larvae ingested half as much food as non-parasitised larvae. The decrease in feeding due to parasitism was associated with a reduced growth rate as suggested by the sign~ficantly lower standard lengths observed in parasitised larvae. Moreover, the size advantage of non-parasitlsed larvae is expected to be ampMied because larger larvae ingest proportionally more food than smaller larvae. We suggest that the impact of parasitism on larval survival and subsequent recruitment m flshes merits far more attention than afforded to date.

Variations in larval fish growth rates are largely the result of variability in biotic and abiotic characteristics of the feeding environment experienced by each individual. An assessment of an individual's overall feeding success (i.e. accumulation of utilizable organic matter) can best be achieved at the time of capture when the relationships among environment, short-term feeding success as defined by gut content and long-term feeding success as defined by accumulated growth can be contrasted. Here, we investigated the relationships between average growth, feeding success, and variability in individual growth and feeding rates across a range of taxa based on a synthesis of studies in which stomach content and otolith growth were measured in the same individuals. Instantaneous measures of feeding success were highly variable and demonstrated a positive yet somewhat limited association with growth rates across all taxa. The strength of the feeding-growth relationships among taxa, and cohorts within taxa, was reflected in the autocorrelation of individual growth rates, suggesting that stable growth was achieved through consistent feeding success. However, when viewed at the individual level, faster growth was achieved in individuals with more variable growth rates, and by inference more variable past feeding success. The dichotomy in these underlying relationships may point to the importance of stochastic events in the development of exceptional individuals in a population, and may be linked to how surplus energy is allocated to individual growth rates. The positive correlation found between feeding success and growth in all taxa is consistent with the growth-survival paradigm for the larval stage of fish. However, both the correlation between feeding success and growth and the serial correlation of growth time-series was greatest in fast-growing species, suggesting that the potential for an early “critical period” regulating survival varies among species, reaching a maximum in fast-growing fish.

This study develops a new back-calculation method, based on the larvae of rainbow smelt (Osmerus mordax), that takes into account the variation of growth rate over time. Known-aged larvae were reared in four 60-L microcosms during 49 days in order to obtain a large range of individual growth trajectories. We first validated the daily nature of the otolith increment deposition rate. The proposed time-varying growth (TVG) method weights the contribution of each increment in the length calculation using a growth effect factor. A small growth increment contributes less to the length increase of larvae than its relative importance in total otolith growth. On the other hand, a large growth increment contributes more to the length increase of larvae in comparison with its relative importance in total otolith growth. This method provided significantly better estimates of previous length-at-age than the biological intercept (BI) method at the individual level. In addition, the TVG method tended to provide more accurate estimates of previous length-at-age than the BI method at the population level, but the difference was not significant. The importance of using the TVG method instead of the BI method to back-calculate individual and population growth trajectories increases with the magnitude of the growth effect and the variation in growth rates over time.

Understanding genomic signatures of divergent selection underlying long-term adaptation in populations located in heterogeneous environments is a key goal in evolutionary biology. In this study, we investigated neutral, adaptive and deleterious genetic variation using 7,192 SNPs in 31 Lake Trout (Salvelinus namaycush) populations (n = 673) from Québec, Canada. Average genetic diversity was low, weakly shared among lakes, and positively correlated with lake size, indicating a major role for genetic drift subsequent to lake isolation. Putatively deleterious mutations were on average at lower frequencies than the other SNPs, and their abundance relative to the entire polymorphism in each population was positively correlated with inbreeding, suggesting that the effectiveness of purifying selection was negatively correlated with inbreeding, as predicted from theory. Despite evidence for pronounced genetic drift and inbreeding, several outlier loci were associated with temperature and found in or close to genes with biologically relevant functions notably related to heat stress and immune responses. Outcomes of gene-temperature associations were influenced by the inclusion of the most inbred populations, in which allele frequencies deviated the most from model predictions. This result illustrates challenge in identifying gene-environment associations in cases of high genetic drift and restricted gene flow and suggests limited adaptation in populations experiencing higher inbreeding. We discuss the relevance of these findings for the conservation and management, notably regarding stocking and genetic rescue, of Lake Trout populations and other species inhabiting highly fragmented habitats.

Gene flow has tremendous importance for local adaptation, by influencing the fate of de novo mutations, maintaining standing genetic variation and driving adaptive introgression. Furthermore, structural variation as chromosomal rearrangements may facilitate adaptation despite high gene flow. However, our understanding of the evolutionary mechanisms impending or favouring local adaptation in the presence of gene flow is still limited to a restricted number of study systems. In this study, we examined how demographic history, shared ancestral polymorphism, and gene flow among glacial lineages contribute to local adaptation to sea conditions in a marine fish, the capelin (Mallotus villosus). We first assembled a 490‐Mbp draft genome of M. villosus to map our RAD sequence reads. Then, we used a large data set of genome‐wide single nucleotide polymorphisms (25,904 filtered SNPs) genotyped in 1,310 individuals collected from 31 spawning sites in the northwest Atlantic. We reconstructed the history of divergence among three glacial lineages and showed that they probably diverged from 3.8 to 1.8 million years ago and experienced secondary contacts. Within each lineage, our analyses provided evidence for large Ne and high gene flow among spawning sites. Within the Northwest Atlantic lineage, we detected a polymorphic chromosomal rearrangement leading to the occurrence of three haplogroups. Genotype–environment associations revealed molecular signatures of local adaptation to environmental conditions prevailing at spawning sites. Our study also suggests that both shared polymorphisms among lineages, resulting from standing genetic variation or introgression, and chromosomal rearrangements may contribute to local adaptation in the presence of high gene flow.

Nonanadromous Atlantic salmon (Salmo salar) exhibit a combination of variation in life history, habitat, and species co-existence matched by few vertebrates. Distributed in eastern North America and northern Europe, habitat ranges from hundreds of metres of river to Europe’s largest lakes. As juveniles, those with access to a lake usually migrate to feed and grow prior to reproduction. Prey such as smelt (Osmerus mordax, Osmerus eperlanus) and vendace (Coregonus albula) facilitate large body size (50–85 cm at maturity) and persistence in high-diversity (>20 fish species) environments; small-bodied salmon (10–30 cm at maturity), relying on insects as prey, coexist with few (fewer than five) other fishes. At maturity, weight varies more than 400-fold (17 to 7200 g) among populations, fecundity more than 150-fold (33 to 5600), and longevity almost fivefold (3 to 14 years). Landlocked salmon are managed to support sustainable fishing, achieve conservation and restoration targets, and mitigate threats; successes are evident but multiple challenges persist. Extraordinary variability in life history coupled with extensive breadth of habitat and species co-existence render landlocked Atlantic salmon singularly impressive from a biodiversity perspective.

Repeated adaptive ecological diversification has commonly been reported in fish and has often been associated with trophic niche diversity. The main goal of this study was to investigate the extent of parallelism in the genomic and phenotypic divergence between piscivorous and planktivorous lake trout ecotypes from Laurentian Shield lakes, Canada. This was achieved by documenting the extent of morphological differentiation using geometric morphometrics and linear measurements as well as the pattern of genomic divergence by means of RADseq genotyping (3925 filtered SNPs) in 12 lakes. Our results indicate that the two ecotypes evolved distinct body shape and several linear measurements in parallel. Neutral genetic differentiation was pronounced between all isolated populations (Mean FST  = 0.433), indicating no or very limited migration and pronounced genetic drift. Significant genetic differentiation also suggested partial reproductive isolation between ecotypes in the two lakes where they are found in sympatry. Combining different outlier detection methods, we identified 48 SNPs putatively under divergent selection between ecotypes, among which 10 could be annotated and related to functions such as developmental processes and ionic regulation. Finally, our results indicate that parallel morphological divergence is accompanied by both parallel and nonparallel genomic divergence, which is associated with the use of different trophic niches between ecotypes. The results are also discussed in the context of management and conservation of this highly exploited species throughout northern North America.