For the first time we used CuAAC click reaction for the synthesis of cyanine labeled qPCR probes. We performed the comparison of dyes and quenchers (Cy5 vs disulfo-Cy5 and BHQ2 vs BHQ3) in several TaqMan probes with different stability of the secondary structure. Based on the studies of thermal quenching of dyes, increase of fluorescence during probe melting and in the course of qPCR, we suggest that disulfo-Cy5-BHQ2 pair is a preferable one for molecular beacons due to the highest increase of fluorescence during melting. As Cy5-BHQ3 pair gave better Cq and maximal relative increase of fluorescence in qPCR in comparison to others we recommend this pair for Taqman style probe design.
An alkyl azide derivative of 1-phenylethynylpyrene (PEPy) dye was prepared and used in the functionalization of oligonucleotides via click chemistry. Spectral and photo-physical properties of the PEPy-modified oligonucleotides as a single strand, and in perfect or mismatched duplexes, have been studied. A series of PEPy-Dabcyl fluorogenic TaqMan probes were synthesized and tested in qPCR. PEPy proved to be a superior substitute for AMCA as a short wavelength fluorescent dye for qPCR probes. PEPy probes were shown to significantly reduce Cq (a fractional PCR cycle used for quantification) vs. AMCA labeled probes, thus improving on the reliability of detection. Moreover, a larger increase of fluorescence during amplification was observed in the case of PEPy probes that makes this dye very suitable for an end-point PCR technique. This study broadens the panel of fluorescent dyes suitable for the use in probes for quantitative real-time PCR.
The kinetics of scandium sorption with impregnate-containing extractant – phosphine oxide based on hypercrosslinked polystyrene from nitric acid solutions was studied using a method of limited solution volume. A sample of sorbent obtained by impregnation contained 0.233 g extractant/g impregnate. Under batch conditions, the influence of temperature in the range 293-313 K on the kinetics of scandium sorption by impregnate was studied. It was revealed that the saturation of impregnate by scandium is established in 20-30 min. For the processing of integral kinetic scandium sorption curves, the pseudo-first and pseudo-second-order models, as well as the Elovich equation, were used. The values of the rate constants calculated from the pseudo-second-order model, describing the kinetic data with the best correlation coefficients (R2 0.931-0.995), reach (9.51-10.4) g∙(mmol∙min)-1. The activation energy of scandium sorption, calculated by an equation similar to the Arrhenius equation, is (2.8±0.2) kJ / mol. Due to the improved kinetic characteristics compared with traditional sorbents, hypercrosslinked polystyrene impregnates containing phosphine oxide can be used to extract of scandium from solutions formed during the processing of scandium-containing raw materials.Forcitation:Pyae Phyo Aung, Veselova O.A., Troshkina I.D. Kinetics of scandium sorption by impregnate containing phosphinoxide. Izv. Vyssh. Uchebn. Zaved. Khim. Khim. Tekhnol. 2017. V. 60. N 8. P. 28-30.
Получены импрегнаты, содержащие ди-2-этилгексилфосфорную кислоту (Д2ЭГФК) и этилгексилфосфорную кислоту (ЭГФК) в сверхсшитом полистироле (MN-202). В статических условиях определены равновесные и кинетические характеристики сорбции скандия этими импрегнатами из кислых сульфатно-хлоридных растворов.
Rotavirus infection is one of the primary causes of acute gastroenteritis in industrialized countries and may be a cause of severe disease in children. Here we present the results of analysis of specific indicators which characterize the burden of rotavirus infection in Russia such as passive surveillance data for rotavirus gastroenteritis cases (RG), the proportion of outbreaks of rotavirus per calendar month and laboratory-based data of rotavirus infection occurrence in lethal cases involving children. Specific features of rotavirus [P]G genotypes distribution in different geographic regions of Russia from 2012 through 2013 are also provided.
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