Research on computational argumentation faces the problem of how to automatically assess the quality of an argument or argumentation. While different quality dimensions have been approached in natural language processing, a common understanding of argumentation quality is still missing. This paper presents the first holistic work on computational argumentation quality in natural language. We comprehensively survey the diverse existing theories and approaches to assess logical, rhetorical, and dialectical quality dimensions, and we derive a systematic taxonomy from these. In addition, we provide a corpus with 320 arguments, annotated for all 15 dimensions in the taxonomy. Our results establish a common ground for research on computational argumentation quality assessment.

Argumentation quality is viewed differently in argumentation theory and in practical assessment approaches. This paper studies to what extent the views match empirically. We find that most observations on quality phrased spontaneously are in fact adequately represented by theory. Even more, relative comparisons of arguments in practice correlate with absolute quality ratings based on theory. Our results clarify how the two views can learn from each other.

BackgroundMutations as sources of evolution have long been the focus of attention in the biomedical literature. Accessing the mutational information and their impacts on protein properties facilitates research in various domains, such as enzymology and pharmacology. However, manually curating the rich and fast growing repository of biomedical literature is expensive and time-consuming. As a solution, text mining approaches have increasingly been deployed in the biomedical domain. While the detection of single-point mutations is well covered by existing systems, challenges still exist in grounding impacts to their respective mutations and recognizing the affected protein properties, in particular kinetic and stability properties together with physical quantities.ResultsWe present an ontology model for mutation impacts, together with a comprehensive text mining system for extracting and analysing mutation impact information from full-text articles. Organisms, as sources of proteins, are extracted to help disambiguation of genes and proteins. Our system then detects mutation series to correctly ground detected impacts using novel heuristics. It also extracts the affected protein properties, in particular kinetic and stability properties, as well as the magnitude of the effects and validates these relations against the domain ontology. The output of our system can be provided in various formats, in particular by populating an OWL-DL ontology, which can then be queried to provide structured information. The performance of the system is evaluated on our manually annotated corpora. In the impact detection task, our system achieves a precision of 70.4%-71.1%, a recall of 71.3%-71.5%, and grounds the detected impacts with an accuracy of 76.5%-77%. The developed system, including resources, evaluation data and end-user and developer documentation is freely available under an open source license at http://www.semanticsoftware.info/open-mutation-miner.ConclusionWe present Open Mutation Miner (OMM), the first comprehensive, fully open-source approach to automatically extract impacts and related relevant information from the biomedical literature. We assessed the performance of our work on manually annotated corpora and the results show the reliability of our approach. The representation of the extracted information into a structured format facilitates knowledge management and aids in database curation and correction. Furthermore, access to the analysis results is provided through multiple interfaces, including web services for automated data integration and desktop-based solutions for end user interactions.

witte@semanticsoftware.info.

BackgroundMutation impact extraction is a hitherto unaccomplished task in state of the art mutation extraction systems. Protein mutations and their impacts on protein properties are hidden in scientific literature, making them poorly accessible for protein engineers and inaccessible for phenotype-prediction systems that currently depend on manually curated genomic variation databases.ResultsWe present the first rule-based approach for the extraction of mutation impacts on protein properties, categorizing their directionality as positive, negative or neutral. Furthermore protein and mutation mentions are grounded to their respective UniProtKB IDs and selected protein properties, namely protein functions to concepts found in the Gene Ontology. The extracted entities are populated to an OWL-DL Mutation Impact ontology facilitating complex querying for mutation impacts using SPARQL. We illustrate retrieval of proteins and mutant sequences for a given direction of impact on specific protein properties. Moreover we provide programmatic access to the data through semantic web services using the SADI (Semantic Automated Discovery and Integration) framework.ConclusionWe address the problem of access to legacy mutation data in unstructured form through the creation of novel mutation impact extraction methods which are evaluated on a corpus of full-text articles on haloalkane dehalogenases, tagged by domain experts. Our approaches show state of the art levels of precision and recall for Mutation Grounding and respectable level of precision but lower recall for the task of Mutant-Impact relation extraction. The system is deployed using text mining and semantic web technologies with the goal of publishing to a broad spectrum of consumers.

This paper describes the digitization and enrichment of the Canadian House of Commons English Debates from 1901 to present. We start by laying out the general framework in which this project took place and then present the structure of the database and provide guidelines to prospective users. The paper concludes with the introduction ofwww.lipad.ca, an online platform designed as a hub for archiving Canadian political data, with the parliamentary proceedings at the centre of its architecture.

Abstract:In parliamentary discourse, politicians expound their beliefs and goals through argumentation, and, to persuade the audience, they communicate their values by highlighting some aspect of an issue, an action which is commonly known as framing. The choices of frames are typically dependent upon the speaker's ideology. In this proposed doctoral work, we will computationally analyze framing strategies and present a model for discovering the latent structure of framing of real-world issues in Canadian parliamentary discourse.

Previous approaches to generic frame classification analyze frames at the document level. Here, we propose a supervised based approach based on deep neural networks and distributional representations for classifying frames at the sentence level in news articles. We conduct our experiments on the publicly available Media Frames Corpus compiled from the U.S. Newspapers. Using (B)LSTMs and GRU networks to represent the meaning of frames, we demonstrate that our approach yields at least 14-point improvement over several baseline methods.