Eighteen active substances, including 17 organosulfur compounds found in garlic essential oil (T), were identified by GC−MS analysis. For the first time, using the molecular docking technique, we report the inhibitory effect of the considered compounds on the host receptor angiotensin-converting enzyme 2 (ACE2) protein in the human body that leads to a crucial foundation about coronavirus resistance of individual compounds on the main protease (PDB6LU7) protein of SARS-CoV-2. The results show that the 17 organosulfur compounds, accounting for 99.4% contents of the garlic essential oil, have strong interactions with the amino acids of the ACE2 protein and the main protease PDB6LU7 of SARS-CoV-2. The strongest anticoronavirus activity is expressed in allyl disulfide and allyl trisulfide, which account for the highest content in the garlic essential oil (51.3%). Interestingly, docking results indicate the synergistic interactions of the 17 substances, which exhibit good inhibition of the ACE2 and PDB6LU7 proteins. The results suggest that the garlic essential oil is a valuable natural antivirus source, which contributes to preventing the invasion of coronavirus into the human body. Figure 1. Picture of garlic (A. sativum L.).Article

Flavonoids provide potential health benefits due to their antioxidant properties. The antioxidant activity of natural flavonoids is primarily exerted by phenolic hydroxyl groups; however, C–H bonds also contribute to these properties. In this study, the contributions of phenolic groups and C–H bonds to the antioxidant properties of 13 flavonoids were investigated by using the (RO)B3LYP/6-311++G(2df,2p)//B3LYP/6-311G(d,p) model chemistry in the gas phase and water and ethanol solvents. It was found that the C–H bonds have lower bond dissociation energies than O–H bonds in the 4-carbonyl and/or 3-hydroxyl group containing flavonoids and hence define antioxidant activity. The HOO · radical scavenging of the selected flavonoids is also investigated in detail through the potential energy surface, natural bond orbitals, and kinetic calculations. It was found that the favored radical scavenging mechanism of the flavonoids is hydrogen atom transfer, with the gas phase rate constants in the range of 7.23 × 10 3 –2.07 × 10 9 L·mol –1 ·s –1 . The results suggest that the flavonoids, isomelacacidin, isoteracacidin, melacacidin, and teracacidin, have antioxidant properties as high as typical phenolic compounds such as quercetin, trans -resveratrol, trolox, and ascorbic acid.

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In this study, 16 gas phase complexes of the pairs of XCHZ and CO(2) (X = F, Cl, Br; Z = O, S) have been identified. Interaction energies calculated at the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ level including both BSSE and ZPE corrections range from -5.6 to -10.5 kJ mol(-1) for XCHOCO(2) and from -5.7 to -9.1 kJ mol(-1) for XCHS···CO(2). Substitution of one H atom by one halogen in formaldehyde and thioformaldehyde reduces the interaction energy of XCHZ···CO(2), while a CH(3) substitution increases the interaction energy of both CH(3)CHO···CO(2) and CH(3)CHS···CO(2). NBO and AIM analyses also point out that the strength of Lewis acid-base interactions decreases going from >C1=S3···C6 to >C1=O3C6 and to >C1-X4···C6. This result suggests the higher capacity of solubility of thiocarbonyl compounds in scCO(2), providing an enormous potential application for designing CO(2)-philic materials based on the >C=S functional group in competition with >C=O. The Lewis acid-base interaction of the types >C=S···C, >C-Cl···C and >C-Br···C is demonstrated for the first time. The contribution of the hydrogen bonding interaction to the total interaction energy is larger for XCHS···CO(2) than for XCHO···CO(2). Upon complexation, a contraction of the C1-H2 bond length and a blue shift of its stretching frequency have been observed, as compared to the isolated monomer, indicating the existence of a blue-shifting hydrogen bond in all complexes examined. Calculated results also lend further support for the viewpoint that when acting as proton donor, a C-H bond having a weaker polarization will induce a stronger distance contraction and frequency blue shift upon complexation, and vice versa.

Surface enhanced Raman scattering (SERS) experiments and quantum chemical calculations (using density functional theory) on the interactions of chlorpyrifos (CPF), which is an intensively used pesticide, with a roughed silver nanoparticle surface were thoroughly investigated to study the inherent molecular mechanism. Ligand−cluster interaction geometries show that the CPF molecule is mainly adsorbed on the silver surface via both S atom and pyridine ring involving a covalent Ag•••S coordination as well as van der Waals physisorption. Raman vibrational modes of CPF are centered at 474, 632, 678, 1277, and 1551 cm −1 characterizing the P−O−C bending, PS stretching, Cl-ring mode, and pyridine ring stretching, respectively, which are all enhanced when CPF is adsorbed on a silver surface. The concentration-dependent effect of CPF on silver substrates has been reproduced for the first time by coordinating 2 and 3 CPF molecules on an Ag 20 silver cluster model simulated by DFT computations. The intensities of the characteristic peaks of CPF as shown in the calculated SERS spectra are increased by 2 and 3 times with respect to those of the CPF−Ag 20 complex, which indicate a positive influence of high analyst concentration on the SERS signal. This observation can be explained by the electron-donating effect of CPF upon adsorption. The latter donates an electron from its lone pair on S and Cl atoms and a π electron on the SP bond to silver atoms on the surface, and then the positive charge of silver surface is displaced to the CPF moiety via Ag•••S and Ag••• Cl contacts. The information obtained from the adsorption of CPF on silver by SERS is helpful to understand the molecular mechanism of adsorption process involving chlorpyrifos ligand coordinated on silver nanoparticle surfaces. It also contributes to design field detection methods for rapid screening and monitoring of pesticides in environment or agricultural products by using portable detection systems such as paper-based or fiber-based SERS sensors.