In contrast to cytoplasmic localization of spliced mRNAs, many spliced lncRNAs are localized in the nucleus. To investigate the mechanism, we used lncRNA MEG3 as a reporter and mapped a potent nuclear retention element (NRE), deletion of this element led to striking export of MEG3 from the nucleus to the cytoplasm. Insertion of the NRE resulted in nuclear retention of spliced lncRNA as well as spliced mRNA. We further purified RNP assembled on the NRE in vitro and identified the proteins by mass spectrometry. Screen using siRNA revealed depletion of U1 snRNP components SNRPA, SNRNP70 or SNRPD2 caused significant cytoplasmic localization of MEG3 reporter transcripts. Co-knockdown these factors in HFF1 cells resulted in an increased cytoplasmic distribution of endogenous lncRNAs. Together, these data support a model that U1 snRNP components restrain spliced lncRNAs in the nucleus via the interaction with nuclear retention element.

This study investigated the fluoride (F) concentrations and physicochemical parameters of the groundwater in a fluorite mining area of the flood plain region of the River Swat, with particular emphasis on the fate and distribution of F and the hydrogeochemistry. To better understand the groundwater hydrochemical profile and F enrichment, groundwater samples (n=53) were collected from shallow (24-40m), mid-depth (48-65m) and deep (85-120m) aquifers, and then analysed using an ion-selective electrode. The lowest F concentration (0.7mg/L) was recorded in the deep-aquifer groundwater, while the highest (6.4mg/L) was recorded in shallow groundwater. Most groundwater samples (62.2%) exceeded the guideline (1.5mg/L) set by the World Health Organization (WHO); while for individual sources, 73% of shallow-groundwater samples (F concentration up to 6.4mg/L), 42% of mid-depth-groundwater samples, and 17% of deep-groundwater samples had F concentrations that exceeded this permissible limit. Assessment of the overall quality of the groundwater revealed influences of the weathering of granite and gneisses rocks, along with silicate minerals and ion exchange processes. Hydrogeochemical analysis of the groundwater showed that Na is the dominant cation and HCO the major anion. The anionic and cationic concentrations across the entire study area increased in the following order: HCO>SO>Cl>NO>F>PO and Na>Ca>Mg>K, respectively. Relatively higher F toxicity levels were associated with the NaHCO water type, and the chemical facies were found to change from the CaHCO to (NaHCO) type in calcium-poor aquifers. Thermodynamic considerations of saturation indices indicated that fluorite minerals play a vital role in the prevalence of fluorosis, while under-saturation revealed that - besides fluorite minerals - other F minerals that are also present in the region further increase the F concentrations in the groundwater. Finally, a health risk assessment via Dean's classification method identified that the groundwater with relatively higher F concentrations is unfit for drinking purposes.

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Paulownia tomentosa, a woody plant that is widely found in Pakistan and in other regions of the world, was used as a raw material to prepare activated carbon using chemical and physical activation methods. Adsorption of the dyes- acid red 4 and methylene blue onto the prepared activated carbon were analyzed by batch experiments. The impacts of different adsorption parameters such as pH, temperature, contact time, initial dye concentration and adsorbent dosage were also evaluated. Equilibrium data were fitted into various isotherm models such as: Langmuir, Temkin and Freundlich. High regression values were achieved with Langmuir isotherm model. Different kinetic adsorption models such as pseudo-first-order, pseudo-second-order and intra-particle diffusion model models were applied. The adsorption kinetics was found to be best-fitted into pseudo-second-order kinetic model. The optimum pH for acid red 4 was around 1 while for methylene blue it was 8. The optimum adsorbent dosage was 0.3 g for both dyes used. The activation energy (Ea) values were 30.57 and 3.712 kJ/mol, respectively for acid red 4 and methylene blue while the enthalpy (ΔH) and entropy (ΔS) values were correspondingly as 24.88/1.1927 kJ/mol and −2843.32/−0.329 J·mol/K for the mentioned dyes. The experimental result showed that the prepared activated carbon was the best in the removal of acid red 4 and methylene blue from aqueous media and therefore, could be preferably used as cheap adsorbent in wastewater treatment.

XAB2 is a multi-functional protein participating processes including transcription, splicing, DNA repair and mRNA export. Here, we report POLR2A, the largest catalytic subunit of RNA polymerase II, as a major target gene down-regulated after XAB2 depletion. XAB2 depletion led to severe splicing defects of POLR2A with significant intron retention. Such defects resulted in substantial loss of POLR2A at RNA and protein levels, which further impaired global transcription. Treatment of splicing inhibitor madrasin induced similar reduction of POLR2A. Screen using TMT-based quantitative proteomics identified several proteins involved in mRNA surveillance including Dom34 with elevated expression. Inhibition of translation or depletion of Dom34 rescued the expression of POLR2A by stabilizing its mRNA. Immuno-precipitation further confirmed that XAB2 associated with spliceosome components important to POLR2A expression. Domain mapping revealed that TPR motifs 2–4 and 11 of XAB2 were critical for POLR2A expression by interacting with SNW1. Finally, we showed POLR2A mediated cell senescence caused by XAB2 deficiency. Depletion of XAB2 or POLR2A induced cell senescence by up-regulation of p53 and p21, re-expression of POLR2A after XAB2 depletion alleviated cellular senescence. These data together support that XAB2 serves as a guardian of POLR2A expression to ensure global gene expression and antagonize cell senescence.

In this study palladium-nickel (Pd-Ni) nanoparticles supported on carbon and cerium oxide (Pd-Ni/AC-CeO2) were synthesized by a transfer phase method and characterized by scanning electronic microscopy (SEM), X-ray diffraction (XRD), and energy-dispersive X-ray spectroscopy (EDX). The XRD and SEM data concluded the presence of alloy formation between Pd and Ni. The synthesized particles were used as an adsorbent for removal of azo dye acid orange-8 (AO-8) from water and were found to be effective in removal (over 90% removal efficiency) of the selected dye. Different kinetics and equilibrium models were applied to calculate the adsorption parameters. The most suitable model that best fitted the equilibrium data was the Langmuir model and maximum adsorption capacities were 666.6, 714 and 769 mg/g at 293, 313 and 333 K, respectively, with R2 values closed to 1 while in the case of the kinetics data the best fit was obtained with a pseudo-second order kinetics model with a high R2 value. Furthermore, the adsorption thermodynamics parameters such as free energy, enthalpy, and entropy were calculated and the adsorption process was to found be exothermic with a value of ΔH° (−7.593 kJ mol−1), spontaneous as ΔG° values were negative (−18.7327, −19.4870, and −20.584 kJ/mol at 293, 313 and 333 K, respectively). A positive entropy change ΔS° with a value of 0.0384 kJ /mol K indicates increased disorder at the solid–solution interface during the adsorption process. An attempt was made to recycle the Pd-Ni/AC-CeO2 with suitable solvents and the recycled adsorbent was reused for 6 cycles with AO-8 removal efficiency up to 80%. Based on findings of the study, the synthesized adsorbent could effectively be used for the removal of other pollutants from wastewater, however, further studies are needed to prove the mechanisms.

A molecular dynamics (MD) simulation method has been proposed for three-dimensional (3D) electrorheological complex (dusty) plasmas (ER-CDPs). The velocity autocorrelation function (VACF) and self-diffusion coefficient (D) have been investigated through Green-Kubo expressions by using equilibrium MD simulations. The effect of uniaxial electric field (MT) on the VACF and D of dust particles has been computed along with different combinations of plasma Coulomb coupling (Γ) and Debye screening (κ) parameters. The new simulation results reflect diffusion motion for lower-intermediate to higher plasma coupling (Γ) for the sufficient strength of 0.0 < M ≥ 1.5. The simulation outcomes show that the MT significantly affects VACF and D. It is observed that the strength of MT increases with increasing the Γ and up to κ = 2. Furthermore, it is found that the increasing trend in D for the external applied MT significantly depends on the combination of plasma parameters (Γ, κ). For the lower values of Γ, the proposed method works only for the low strength of MT; at higher Γ, the simulation scheme works for lower to intermediate MT, and D increased almost 160%. The present results are in fair agreement with parts of other MD data in the literature, with our values generally overpredicting the diffusion motion in ER-CDPs. The investigations show that the present algorithm more effective for the liquids-like and solid-like state of ER-CDPs. Thus, current equilibrium MD techniques can be employed to compute the thermophysical properties and also helps to understand the microscopic mechanism in ER-CDPs.