Bacterial chemotaxis has the potential to enhance biodegradation of organic contaminants in polluted groundwater systems. However, studies of bacterial chemotaxis in porous media are scarce. In this study we use magnetic resonance imaging (MRI) for the noninvasive measurement of changes in bacterial-density distributions in a packed column at a spatial resolution of 330 microm as a function of time. We analyze both the diffusive and the chemotactic behavior of Pseudomonas putida F1 in the presence of the chemical stimulus trichloroethylene (TCE). The migration of motile bacteria in experiments without TCE was described using an effective motility coefficient, whereas the presence of TCE required addition of a nonzero chemotactic sensitivity coefficient, indicating a significant response to TCE. The need for a chemotactic sensitivity term was justified by a test for statistical significance. This study represents the first quantification of bacterial chemotactic parameters within a packed column. For conditions under which chemotaxis occurs in porous media, it may potentially be exploited to significantly improve rates of in situ pollutant biodegradation in the subsurface environment, particularlyfor pollutants dissolved in water trapped in low-permeability formations or lenses.

Subsurface bacteria often have to travel significant distances through tortuous porous media for purposes of groundwater remediation. In modeling such processes, motile bacteria are often represented as suspended colloids, ignoring their individual swimming or diffusive properties. In fact, bacterial migration is much more profoundly affected by the presence of porous media than is that of a chemical contaminant. In this study, we use magnetic resonance imaging (MRI) to perform noninvasive measurements of changes in bacterial concentration distributions across a packed column at a spatial resolution of 330 microm as a function of time. We analyze the diffusive behavior of Pseudomonas putida F1 under static conditions and compare that behavior to the diffusion of a chemical solute and of Escherichia coli NR50. Results indicate that P. putida cells experience a column tortuosity 50 times higher than that predicted from solute diffusion experiments. E. coli cells, which display shorter swimming run lengths in bulk solution than P. putida, seem to be less affected by the constricted pore space. Knudsen diffusion, or reductions in run length because of interactions between the diffusing bacteria and the porous media, may help to explain some of this discrepancy.

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