The aim of the present study was to investigate the photosynthetic properties and transcriptomic profiles of wildtype and chlorophyll (Chl) blacking rice (Oryza sativa L.). The plastid ultrastructure of the Chl blacking rice (i.e., loss of starch granules, abundant vesicles, and abundant plastoglobuli) indicated abnormal plastid development, whereas the analysis of transcriptome profiles and differentially expressed genes revealed that gene encoding PsbR (PSII core protein) was downregulated in the mutant, thereby reducing the Chl accumulation of the mutant. Meanwhile, in regards to Chl biosynthesis and degradation pathways, GluTR gene was downregulated, whereas UROD, CPOX, and MgCH genes were upregulated. The qPCR results were generally consistent with those of the transcription analysis, except for the finding that NOL genes, which regulate Chl b degradation, were upregulated. These results suggest that both the reduction in Chl accumulation and increase in conversion rate of Chl b to Chl a caused Chl a/b ratio amplification in mutant. The present study also provides evidence for Chl b degradation via pheophorbide b.

Biocontrol offers an attractive alternative to the use of chemical pesticides in agricultural pest management. The development of high levels of resistance to chemical pesticides have forced researchers to find more alternative biological control agents. The aims of this study were to isolate Paecilomyces spp. with high virulence against diamondback moth (Plutella xylostella) and Oriental leafworm moth (Spodoptera litura), and to investigate suitable agro-industrial residues as a substrate used for solid state fermentation for sporulation of isolates. In this study, Paecilomyces spp. were isolated from soil and insects and identified by morphological and sequencing analyses. The pathogenicity of these isolates was evaluated on Pl. xylostella and S. litura to identify strains with the highest virulence. In addition, agro-industrial residues were used as a cheap substrate for investigating a suitable medium for sporulation on an industrial scale. Six strains of Paecilomyces spp. were isolated including one strain of P. lilacinus and five strain of P. javanicus. P. lilacinus PL01 showed the highest virulence against both Pl. xylostella and S. litura with respective LT 50 values of 2.51 and 7.09 days. The five isolated P. javanicus strains also strongly infected Pl. xylostella with LT 50 values of 2.52~6.59 days. For sporulation, brown rice alone or brown rice mixed with rice husks and wheat bran or rice bran was suitable for cultivating these isolates. Two newly isolated species of Paecilomyces, P. lilacinus and P. javanicus, can be used as biological control agents for controlling Pl. xylostella and S. litura.

Photosynthesis is an essential biological process and a key approach for raising crop yield. However, photosynthesis in rice is not fully investigated. This study reported the photosynthetic properties and transcriptomic profiles of chlorophyll (Chl) b-deficient mutant (ch11) and wild-type rice (Oryza sativa L.). Chl b-deficient rice revealed irregular chloroplast development (indistinct membranes, loss of starch granules, thinner grana, and numerous plastoglobuli). Next-generation sequencing approach application revealed that the differential expressed genes were related to photosynthesis machinery, Chl-biosynthesis, and degradation pathway in ch11. Two genes encoding PsbR (PSII core protein), FtsZ1, and PetH genes, were found to be down-regulated. The expression of the FtsZ1 and PetH genes resulted in disrupted chloroplast cell division and electron flow, respectively, consequently reducing Chl accumulation and the photosynthetic capacity of Chl b-deficient rice. Furthermore, this study found the up-regulated expression of the GluRS gene, whereas the POR gene was down-regulated in the Chl biosynthesis and degradation pathways. The results obtained from RT-qPCR analyses were generally consistent with those of transcription analysis, with the exception of the finding that MgCH genes were up-regulated which enhance the important intermediate products in the Mg branch of Chl biosynthesis. These results indicate a reduction in the accumulation of both Chl a and Chl b. This study suggested that a decline in Chl accumulation is caused by irregular chloroplast formation and down-regulation of POR genes; and Chl b might be degraded via the pheophorbide b pathway, which requires further elucidation.

Photosynthetic and transcriptomic characteristics of a chlorophyll (Chl) b-deficient mutant type 2b rice (ch14) were investigated in this study. The ultrastructure of chloroplast in ch14 demonstrated irregular chloroplast enhancement (loss of starch granules, indistinct membranes, and thinner grana). Ch14 had significantly lower carotenoid, Chl a, Chl b, and total Chl contents, but a higher ratio of Chl a to Chl b than a wide-type rice. 3,594 genes were differentially expressed in ch14, among which 309 transcription factors were related to Chl degradation and biosynthesis, chloroplast formations, and the photosynthesis capacity. PsbR, GSA-AT, PBGD, PPOX, MgMT, and POR genes were down-regulated, reducing Chl content and photosynthetic capacity in the ch14. This study suggests that Chl degradation may be attributed to abnormal chloroplast development and down-regulation of gene expression in the common pathway and Mg branch and the rise in Chl a to Chl b ratio may be involved in the alternative Chl b degradation pathway.