Some lineages of ants, termites, and beetles independently evolved a symbiotic association with lignocellulolytic fungi cultivated for food, in a lifestyle known as fungiculture. Fungus-growing insects' symbiosis also hosts a bacterial community thought to integrate their physiology. Similarities in taxonomic composition support the microbiota of fungus-growing insects as convergent, despite differences in fungus-rearing by these insects. Here, by comparing fungus-growing insects to several hosts ranging diverse dietary patterns, we investigate whether the microbiota taxonomic and functional profiles are characteristic of the fungiculture environment. Compared to other hosts, the microbiota associated with fungus-growing insects presents a distinctive taxonomic profile, dominated by Gammaproteobacteria at class level and by Pseudomonas at genera level. even with a functional profile presenting similarities with the gut microbiota of herbivorous and omnivorous hosts, some differentially abundant features codified by the microbiota of fungus-growing insects suggest these communities occupying microhabitats that are characteristic of fungiculture. these features include metabolic pathways involved in lignocellulose breakdown, detoxification of plant secondary metabolites, metabolism of simple sugars, fungal cell wall deconstruction, biofilm formation, antimicrobials biosynthesis, and metabolism of diverse nutrients. Our results suggest that the microbiota could be functionally adapted to the fungiculture environment, codifying metabolic pathways potentially relevant to the fungus-growing insects' ecosystems functioning. Most of the organic carbon in land plants is stocked as lignocellulose 1 , a recalcitrant mesh constituted by biopolymers including cellulose, hemicellulose, pectin, and lignin 2,3. For feeding on recalcitrant and indigestible lignocellulosic plant tissues, herbivorous animals rely largely on the association with symbiotic microorganisms, which mediates the use of otherwise non-accessible resources 4-7. Besides metabolizing plant biomass components by hydrolysis and fermentation, the host-associated microbiota also assists the detoxification of plant-derived defensive secondary compounds 4,7,8. A fascinating example of insect-microbial symbiosis for exploring recalcitrant plant biomass is observed in fungus-growing insects (FGI), which maintain lignocellulolytic fungi as crops 9. The active maintenance of fungus crops, also known as fungiculture, evolved independently in three insect lineages 9 : ants in the subtribe Attina (Hymenoptera: Formicidae: Myrmicinae, "the attines"), which are strict to the New World 10,11 ; beetles in the subfamilies Scolytinae and Platypodinae (Coleoptera: Curculionidae), which are predominantly found in tropical and subtropical ecosystems 12 ; and termites in the subfamily Macrotermitinae (Isoptera: Termitidae), which occur in the Old-World tropics, mainly in Africa and Asia 13. The fungal lignocellulose-degrading capacity has been fundamental for the evolutionary succes...

Leaf-cutting ants modify the properties of the soil adjacent to their nests. Here, we examined whether such an ant-altered environment impacts the belowground fungal communities. Fungal diversity and community structure of soil from the fungus garden chambers of Atta sexdens rubropilosa and Atta bisphaerica, two widespread leaf-cutting ants in Brazil, were determined and compared with non-nest soils. Culture-dependent methods revealed similar species richness but different community compositions between both types of soils. Penicillium janthinellum and Trichoderma spirale were the prevalent isolates in fungus chamber soils and non-nest soils, respectively. In contrast to cultivation methods, analyses of clone libraries based on the internal transcribed spacer (ITS) region indicated that richness of operational taxonomic units significantly differed between soils of the fungus chamber and non-nest soils. FastUnifrac analyses based on ITS sequences further revealed a clear distinction in the community structure between both types of soils. Plectania milleri and an uncultured Clavariaceae fungus were prevalent in fungus chamber soils and non-nest soils, respectively. FastUnifrac analyses also revealed that fungal community structures of soil from the garden chambers markedly differed among ant species. Our findings suggest that leaf-cutting ants affect fungal communities in the soil from the fungus chamber in comparison to non-nest soils.

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In this paper we describe the nearly complete mitochondrial genome of the leaf-cutter ant Atta laevigata, assembled using transcriptomic libraries from Sanger and Illumina next generation sequencing (NGS), and PCR products. This mitogenome was found to be very large (18,729 bp), given the presence of 30 non-coding intergenic spacers (IGS) spanning 3,808 bp. A portion of the putative control region remained unsequenced. The gene content and organization correspond to that inferred for the ancestral pancrustacea, except for two tRNA gene rearrangements that have been described previously in other ants. The IGS were highly variable in length and dispersed through the mitogenome. This pattern was also found for the other hymenopterans in particular for the monophyletic Apocrita. These spacers with unknown function may be valuable for characterizing genome evolution and distinguishing closely related species and individuals. NGS provided better coverage than Sanger sequencing, especially for tRNA and ribosomal subunit genes, thus facilitating efforts to fill in sequence gaps. The results obtained showed that data from transcriptomic libraries contain valuable information for assembling mitogenomes. The present data also provide a source of molecular markers that will be very important for improving our understanding of genomic evolutionary processes and phylogenetic relationships among hymenopterans.

A proteotranscriptomic approach provides a biochemical basis for understanding the intricate spinning process and complex structural features of spider silk proteins.

Pressmud is a substrate derived from sugarcane juice filtrate, and around 26-40 kg of this residue are produced per ton of sugarcane. It is mainly used as fertilizer in crops, and its application in the field is often made without any prior treatment, but, in this research, it was studied for the risk this practice poses for human health. This research was stimulated by previous results indicating the presence of opportunistic pathogens in residues used in various composting systems and the extensive use of fresh pressmud in agriculture. Here, It was assessed the fungal diversity present in both fresh and composting pressmud using 454 pyrosequencing. In addition, heat-tolerant fungi were isolated and surveyed for their enzymatic repertoire of biomass-degrading enzymes (cellulase, xylanase, laccase and polygalacturonase). A wide range of opportunistic pathogens was found among the most abundant taxa in the fresh pressmud, such as Lomentospora prolificans (43.13 %), Trichosporon sp. (10.07 %), Candida tropicalis (7.91 %), and Hormographiella aspergillata (8.19 %). This indicates that fresh pressmud might be a putative source of human pathogenic fungi, presenting a potential threat to human health if applied as fertilizer without any treatment. With regard to the heat-tolerant fungi found in this substrate, all the 110 isolates screened were able to produce at least one of the tested enzymes. The pressmud composting process not only effectively reduces the load of pathogenic fungi, but also creates an interesting environment for fungi able to produce thermostable hydrolytic and oxidative enzymes with biotechnological applications.

We present the leaf and floral transcriptomes of two hybridizing bromeliad species that differ in their major pollinator systems. Here we identified candidate genes responsible for pollinator attraction and reproductive isolation in these two species. We searched for candidate genes involved in floral traits, such as colour. Approximately 34 Gbp of cDNA sequence data were produced from both tissues and species, resulting in a total of 424 506 914 raw reads. The de novo-assembled transcriptomes consisted of a total of 263 955 contigs, further clustered into 110 977 unigenes. Over 58% of the unigenes were functionally annotated and assigned to one or more Gene Ontology terms. The transcriptomes revealed 144 unique transcripts that encode key enzymes in the flavonoid and anthocyanin biosynthesis pathways. The domain/family annotation and phylogenetic analysis allowed us to infer, by homology, potential functions of the genes encoding MYB, HD-ZIP and bZIP-HY5 transcription factors, as well as WD40 protein, which may be involved in anthocyanin and flavonoid regulation in these species. These candidate genes are associated with natural regulation in flower colour in other plant species and will facilitate future studies aimed at elucidating the molecular basis of adaptive differentiation and the evolution of mechanisms of pollinator-mediated reproductive isolation in these two bromeliads. In addition, we identified a total of 49 439 microsatellite loci. These resources will assist future research into adaptation and speciation events in bromeliad species, thus providing a starting point for investigation of the molecular mechanisms of the traits responsible for their reproductive isolation.

Symbiotic microorganisms are directly related to the ecological success of host insects, influencing many aspects of their biology. The present study is the first to investigate the microbiota associated with ants of the subfamily Ponerinae and aims to identify the bacterial midgut communities of Dinoponera lucida, Neoponera curvinodis, Pachycondyla striata, Odontomachus brunneus and Odontomachus bauri relied on culture-dependent technique, particularly 16S rRNA sequencing. The greatest species richness was observed in O. bauri, with 15 OTUs, followed by D. lucida with five OTUs, O. brunneus, with four OTUs, and N. curvinodis and P. striata, both with three OTUs. There were representatives of the phyla Actinobacteria, Proteobacteria, Tenericutes and Firmicutes, including the genera Bartonella, Mesoplasma, Mesorhizobium, Spiroplasma, Wolbachia and Serratia in the guts of the studied Ponerine ants. Spiroplasma and Mesoplasma were found to be prevalent in the studied ants and they were the only genera of bacteria found in more than one of the analyzed ant species suggesting they might be beneficial symbionts. The low microbial diversity observed given the predatory trophic habits of the species studied suggests that there is selection for these microorganisms, predominantly preserving symbionts with functional roles that are able to colonize this environment. It is also valid to infer that the identified bacteria are predominant in the gut and exhibit mutualistic functions that are important mainly for immunity, but also to reproduction and nutrition; moreover, a subset may be parasites that could have considerable impacts on the studied ants.