Long noncoding RNAs (lncRNAs) are increasingly appreciated as regulators of cell-specific gene expression. Here, an enhancer-like lncRNA termed NeST (Nettoie Salmonella pas Theiler’s; cleanup Salmonella not Theiler’s) is shown to be causal for all phenotypes conferred by murine viral susceptibility locus Tmevp3. This locus was defined by crosses between SJL/J and B10.S mice and contains several candidate genes, including NeST. The SJL/J-derived locus confers higher lncRNA expression, increased interferon-γ abundance in activated CD8+ T cells, increased Theiler’s virus persistence and decreased Salmonella enterica pathogenesis. Transgenic expression of NeST lncRNA alone was sufficient to confer all phenotypes of the SJL/J locus. NeST RNA was found to bind WDR5, a component of the histone H3 lysine 4 methytransferase complex, and to alter histone 3 methylation at the interferon gamma locus. Thus, this lncRNA regulates epigenetic marking of IFNγ-encoding chromatin, expression of IFN-γ and susceptibility to a viral and a bacterial pathogen.

Objective The lesions of Parkinson's disease spread through the brain in a characteristic pattern that corresponds to axonal projections. Previous observations suggest that misfolded α-synuclein could behave as a prion, moving from neuron to neuron and causing endogenous α-synuclein to misfold. Here, we characterized and quantified the axonal transport of α-synuclein fibrils and showed that fibrils could be transferred from axons to second-order neurons following anterograde transport. Methods We grew primary cortical mouse neurons in microfluidic devices to separate soma from axonal projections in fluidically isolated microenvironments. We used live-cell imaging and immunofluorescence to characterize the transport of fluorescent α-synuclein fibrils and their transfer to second-order neurons. Results Fibrillar α-synuclein was internalized by primary neurons and transported in axons with kinetics consistent with slow component-b of axonal transport (fast axonal transport with saltatory movement). Fibrillar α-synuclein was readily observed in the cell bodies of second-order neurons following anterograde axonal transport. Axon-to-soma transfer appeared not to require synaptic contacts. Interpretation These results support the hypothesis that the progression of Parkinson's disease can be caused by neuron-to-neuron spread of α-synuclein aggregates and that the anatomical pattern of progression of lesions between axonally connected areas results from the axonal transport of such aggregates. That the transfer did not appear to be transsynaptic gives hope that α-synuclein fibrils could be intercepted by drugs during the extra-cellular phase of their journey.

Live attenuated RNA viruses make highly efficient vaccines. Among them, measles virus (MV) vaccine has been given to a very large number of children and has been shown to be highly efficacious and safe. Therefore, this vaccine might be a very promising vector to immunize children against both measles and other infectious agents, such as human immunodeficiency virus. A vector was previously derived from the Edmonston B strain of MV, a vaccine strain abandoned 25 years ago. Sequence analysis revealed that the genome of this vector diverges from Edmonston B by 10 amino acid substitutions not related to any Edmonston subgroup. Here we describe an infectious cDNA for the Schwarz/Moraten strain, a widely used MV vaccine. This cDNA was constructed from a batch of commercial vaccine. The extremities of the cDNA were engineered in order to maximize virus yield during rescue. A previously described helper cell-based rescue system was adapted by cocultivating transfected cells on primary chicken embryo fibroblasts, the cells used to produce the Schwarz/ Moraten vaccine. After two passages the sequence of the rescued virus was identical to that of the cDNA and of the published Schwarz/Moraten sequence. Two additional transcription units were introduced in the cDNA for cloning foreign genetic material. The immunogenicity of rescued virus was studied in macaques and in mice transgenic for the CD46 MV receptor. Antibody titers and T-cell responses (ELISpot) in animals inoculated with low doses of rescued virus were identical to those obtained with commercial Schwarz MV vaccine. In contrast, the immunogenicity of the previously described Edmonston B strain-derived MV clone was much lower. This new molecular clone will allow for the production of MV vaccine without having to rely on seed stocks. The additional transcription units allow expressing heterologous antigens, thereby providing polyvalent vaccines based on an approved, safe, and efficient MV vaccine strain that is used worldwide.

The Tmevp3 locus controls the load of Theiler's virus RNA during persistent infection of the mouse central nervous system (CNS). We identified a candidate gene at this locus, Tmevpg1, by using a positional cloning approach. Tmevpg1 and its human ortholog, TMEVPG1, are expressed in the immune system and encode what appears to be a noncoding RNA. They are located in a cluster of cytokine genes that includes the genes for gamma interferon and one or two homolog of interleukin-10. We now report that Tmevpg1 is expressed in CNS-infiltrating immune cells of resistant B10.S mice, but not in those of susceptible SJL/J mice, following inoculation with Theiler's virus. The pattern of expression of Tmevpg1 is the same in B10.S mice and in SJL/J mice congenic for the resistant B10.S haplotype of Tmevp3. Nineteen polymorphisms were identified when the Tmevpg1 genes of B10.S and SJL/J mice were compared. Interestingly, Tmevpg1 is down regulated after in vitro stimulation of murine CD4 ؉ or CD8 ؉ splenocytes, whereas Ifng is up regulated. Similar patterns of expression of TMEVPG1 and IFNG were observed in human NK cells and CD4 ؉ and CD8 ؉ T lymphocytes. Therefore, Tmevpg1 is a strong candidate gene for the Tmevp3 locus and may be involved in the control of Ifng gene expression.After intracranial inoculation, the DA strain of Theiler's virus replicates for approximately 2 weeks in neurons of the mouse brain and spinal cord, regardless of the mouse's genetic background. Some genetically resistant mice clear the infection at this stage. Others, which are susceptible to persistence of the infection, remain infected for life (26). However, in this case, the virus does not persist in neurons. Instead, it is found in glial cells of the white matter of the spinal cord. Persistent infection of the white matter induces chronic inflammation and primary demyelination similar to those seen in multiple sclerosis (25). Susceptibility to viral persistence varies greatly among inbred strains of mice. The viral genome load during persistent infection is controlled mainly by the H2D class I gene (4-6, 24). However, the SJL/J strain is the only inbred strain among 16 examined for which the viral genome load is greater than that predicted by its H2 s haplotype (13). Studies of bone marrow chimeras of the SJL/J and B10.S strains, which both bear an H2 s haplotype, showed that susceptibility loci with major effects on persistence are expressed in cells of the immune system (3). Some non-H2 susceptibility loci were mapped by using a backcross and congenic mice between the SJL/J and B10.S strains. Two susceptibility loci, Tmevp2 and Tmevp3, were located on chromosome 10 close to the Ifng locus (8, 12). However, immunological studies indicated that the Ifng gene does not explain the effects of the Tmevp2 or the Tmevp3 locus (30). Instead, the Tmevpg1 gene was recently identified by positional cloning of the Tmevp3 locus. It is located telomeric to a cluster of cytokines, which includes the Ifng and IL-22/Il-Tif genes (36). Tmevpg1 has six exons and ap...

Theiler's virus causes a persistent and demyelinating infection of the central nervous system of the mouse, which is one of the best animal models to study multiple sclerosis. This review focuses on the mechanism of persistence. The virus infects neurons for a few weeks and then shifts to white matter, where it persists in glial cells and macrophages. Oligodendrocytes are crucial host cells, as shown by the resistance to persistent infection of mice bearing myelin mutations. Two viral proteins, L and L*, contribute to persistence by interfering with host defenses. L, a small zinc-finger protein, restricts the production of interferon. L*, a unique example of a picornaviral protein translated from an overlapping open reading frame, facilitates the infection of macrophages. Susceptibility to persistent infection, which varies among inbred mouse strains, is multigenic. H2 class I genes have a major effect on susceptibility. Among several non-H2 susceptibility loci, Tmevp3 appears to regulate the expression of important cytokines.

SummaryThe Daniels strain of Theiler's virus causes a persistent infection of the white matter of spinal cord of susceptible mice, with chronic inflammation and primary demyelination. Inbred 129Sv mice are resistant to this infection; they present with mild encephalomyelitis and clear the infection within a matter of days. A very different outcome was observed with inbred 129Sv mice whose receptors for interferon ot//~ or interferon 3' had been inactivated by homologous recombination. The former presented severe encephalomyelitis with acute infection of neurons, particularly in brain and hippocampus, and extensive infection with necrosis of the choroid plexus. Most animals died of this acute disease. The latter, presented the same early encephalomyelitis as the control 129Sv mice. However, they remained persistently infected and developed a very severe late infection of the white matter with extensive primary demyelination. This late disease looked like an exacerbated form of the chronic demyelinating disease observed in susceptible inbred mice such as the SJL/J or FVB strains. Our results show that the two interferon systems play nonredundant roles in the resistance of the 129Sv mouse to the infection by Theiler's virus. They also lend support to the notion that the Ifg gene is involved in the resistance/susceptibility of inbred strains of mice to persistent infection by this picornavirus.

The sensitivity of in situ hybridization has been increased at least 10-fold by hybridizing in cDNA excess, by increasing the diffusion of the cDNA through the cells, by hybridizing at optimum temperature, and by stabilizing hybrids during autoradiography. Saturation of intracellular RNA with l cDNA has been achieved. The assay is quantitative. In situ ybridization has been used to detect and quantitate visna virus RNA in infected cells. By using [3HlcDNA with specific activity of 2 X 108 dpm/,ug and conditions that reduce background to negligible levels, 10-20 copies of viral RNA per cell can be detected and quantitated after 2 days of autoradiographic exposure.In situ hybridization is potentially a very powerful technique for localizing specific genes on chromosomes, following their expression in cells, and detecting and quantitating viral genes in infected cells. Unfortunately, until now the lack of sensitivity of the technique has restricted its use to the study of highly repeated genetic sequences such as the tandemly repeated genes coding for rRNA (1). Visna disease is a slow persistent infection of sheep caused by a retrovirus (2, 3). During our investigation of the molecular pathogenesis of this disease, we showed that virus persistence is a consequence of restricted gene expression in vivo (4). Although proviral DNA is present in the tissues of infected animals, no viral proteins can be detected and the amount of infectious virus synthesized is minimal. In order to analyze this phenomenon further and, in particular, to determine the level at which the restriction is imposed, we have improved the sensitivity of in situ hybridization approximately 10-fold. This enables us to detect 1-10 copies of viral genome per cell with radioautographic exposures of a few days. It should now be possible, with this technique, to address a number of important issues in gene regulation by using radioactive cDNA transcribed in vitro from purified mRNA. MATERIALS AND METHODSPreparation of [3HlcDNA.[3H]DNA complementary to the visna virus genome was prepared in an endogenous reaction in which purified visna virus was used as a source of both RNA-dependent DNA polymerase and viral 70S RNA. The reaction mixture contained 50 mM Tris-HCI (pH 7.4), 8 mM MgCI2, 1 mM dATP, dGTP, and dCTP, 0.1 mM [3H]dTTP at a specific activity of 90 Ci/mmol or greater, 10 mM dithiothreitol, 100,ug of actinomycin D per ml, 0.02% (vol/vol) Triton X-100, and 250 ;g of purified visna virus per ml. The total reaction volume was usually 4 ml. The reaction mixture was incubated at 450C for 2 hr. and the reaction was terminated by addition of EDTA and Sarkosyl to final concentrations of The publication costs of this article were defrayed in part by page charge payment. This article must therefore by hereby marked "advertisement" in accordance with 18 U. S. C. §1734 solely to indicate this fact. 6125 10 mM and 0.5% (wt/vol), respectively. The mixture was incubated for 10 min at 370C; nonradioactive dTTP (in 20-to 100-fold excess) and 200,gg of ye...

Accruing evidence suggests that prion-like behavior of fibrillar forms of α-synuclein, β-amyloid peptide and mutant huntingtin are responsible for the spread of the lesions that characterize Parkinson disease, Alzheimer disease and Huntington disease, respectively. It is unknown whether these distinct protein assemblies are transported within and between neurons by similar or distinct mechanisms. It is also unclear if neuronal death or injury is required for neuron-to-neuron transfer. To address these questions, we used mouse primary cortical neurons grown in microfluidic devices to measure the amounts of α-synuclein, Aβ42 and HTTExon1 fibrils transported by axons in both directions (anterograde and retrograde), as well as to examine the mechanism of their release from axons after anterograde transport. We observed that the three fibrils were transported in both anterograde and retrograde directions but with strikingly different efficiencies. The amount of Aβ42 fibrils transported was ten times higher than that of the other two fibrils. HTTExon1 was efficiently transported in the retrograde direction but only marginally in the anterograde direction. Finally, using neurons from two distinct mutant mouse strains whose axons are highly resistant to neurodegeneration (WldS and Sarm1−/−), we found that the three different fibrils were secreted by axons after anterograde transport, in the absence of axonal lysis, indicating that trans-neuronal spread can occur in intact healthy neurons. In summary, fibrils of α-synuclein, Aβ42 and HTTExon1 are all transported in axons but in directions and amounts that are specific of each fibril. After anterograde transport, the three fibrils were secreted in the medium in the absence of axon lysis. Continuous secretion could play an important role in the spread of pathology between neurons but may be amenable to pharmacological intervention.Electronic supplementary materialThe online version of this article (doi:10.1007/s00401-016-1538-0) contains supplementary material, which is available to authorized users.