Physical chemistry, materials science, analytical chemistry and engineering greatly contributed to the increasing popularity of bioanalytical and biophysical applications of surface plasmon resonance (SPR) by providing novel materials, surface chemistry, instrumental concepts, and theory to further understand the plasmonic phenomenon and support innovation in SPR. This perspective article portrays the contemporary state of SPR-based techniques and establishes a list of challenges to be overcome for improving bioanalytical and biophysical applications of plasmonics and surface plasmon resonance.

Modern photonics is being revolutionized through the use of nanostructured plasmonic materials, which confine light to sub-diffraction limit resolution providing universal, sensitive, and simple transducers for molecular sensors. Understanding the mechanisms by which light interacts with plasmonic crystals is essential for developing application-focussed devices. The strong influence of grating coupling on electromagnetic field distribution, frequency and degeneracy of plasmon bands has now been characterized using hexagonal nanohole arrays. An equation for nanohole arrays was derived to demonstrate the strong influence of incidence and rotation angle on optical properties of 2D plasmonic crystals such as nanohole arrays. Consequently, we report experimental data that are in strong agreement with finite difference time-domain (FDTD) simulations that clearly demonstrate the influence of the grating coupling conditions on the optical properties (such as plasmon degeneracy and bandwidth), and on the distribution of the plasmon field around nanohole arrays (including tuneable penetration depths and highly localized fields). The tuneable 3D plasmon field allowed for controlled sensing properties and by increasing the angle of incidence to 30 degrees, the resonance wavelength was tuned from 1000 to 600 nm, and the sensitivity was enhanced by nearly 300% for a protein assay using surface plasmon resonance (SPR) and by 40% with surface-enhanced Raman scattering (SERS) sensors.

The debate is still ongoing on the optimal mode of interrogation for surface plasmon resonance (SPR) sensors. Comparative studies previously demonstrated that nanoparticles exhibiting a localized SPR (LSPR) have superior sensitivity to molecular adsorption processes while thin Au film-based propagating SPR is more sensitive to bulk refractive index. In this paper, it is demonstrated that nanohole arrays (1000 nm periodicity, 600 nm diameter and 125 nm depth), which support both LSPR and propagating SPR modes, exhibited superior sensitivity to bulk refractive index and improved detection limits for IgG sensing by using the Kretschmann configuration. The greater sensitivity to IgG detection in the Kretschmann configuration was obtained despite the shorter penetration depth of nanohole arrays excited in the enhanced optical transmission (EOT) configuration. The decay length of the electromagnetic field in EOT mode was estimated to be approximately 140 nm using a layer-by-layer deposition technique of polyelectrolytes (PAH and PSS) and was confirmed with 3D FDTD simulations, which was lengthen by almost a factor of two in the Kretschmann configuration. Spectroscopic data and field depth were correlated with RCWA and FDTD simulations, which were in good agreement with the experimental results. Considering these analytical parameters, it is advantageous to develop sensors based on nanohole arrays in the Kretschmann configuration of SPR.

The increasing popularity of surface plasmon resonance (SPR) and surface enhanced Raman scattering (SERS) sensor design based on nanotriangle or nanohole arrays, and the possibility to manufacture substrates at the transition between these plasmonic substrates, makes them ideal candidates for the establishment of structure-property relationships. This work features near diffraction-limited Raman images and FDTD simulations of nanotriangle and nanohole arrays substrates, which clearly demonstrate that the localization of the hot spot on these SERS substrates is significantly influenced by the ratio of diameter/periodicity (D/P). The experimental and simulation data reveal that the hot spots are located around nanotriangles (D/P = 1), characteristic of localized SPR. Decreasing the D/P ratio to 0.75-0.7 led to the creation of nanohole arrays, which promoted the excitation of a propagating surface plasmon (SP) delocalized over the metal network. The optimal SERS intensity was consistently achieved at this transition from nanotriangles to nanoholes, for every periodicity (650 nm to 1.5 μm) and excitation wavelength (633 and 785 nm) investigated, despite the presence or absence of a plasmonic band near the laser excitation. Further decreasing the D/P ratio led to excitation of a localized SP located around the rim of nanohole arrays for D/P of 0.5-0.6, in agreement with previous reports. In addition, this manuscript provides the first evidence that the hot spots are positioned inside the hole for D/P of 0.4, with the center being the region of highest electric field and Raman intensity. The compelling experimental evidence and FDTD simulations offer an overall understanding of the plasmonic properties of nanohole arrays as SERS and SPR sensors, which is of significant value in advancing the diversity of applications from such surfaces.

A multiwell plasmonic reader was designed and validated for higher throughput analysis of biological interactions with a platform of the same size as standard 96-well plates. While the plasmonic sensor can be read with standard 96-well plate readers, a custom 96-well plate reader was designed to analyze nanohole arrays at high incident angles required for higher sensitivity. Gold nanohole arrays were manufactured on a 4 in. glass wafer using a photolithographic process. In comparison to single channel measurements with nanohole arrays fabricated with nanosphere lithography, the nanohole array sensors greatly enhanced the signal-to-noise ratio of the plasmonic signal and precision of the measurements with the multiwell plate system. As proof of concept, the detection of IgG in the low nanomolar range was achieved with the multiwell plate reader. The multiwell plasmonic plate reader was also applied to the screening of several prostate specific (PSA) antibodies for secondary detection of PSA and for the analysis of an anticancer drug through a competitive assay between methotrexate (MTX) and folic acid Au nanoparticle (FaNP) for human dihydrofolate reductase (hDHFR). The multiwell plasmonic reader based on nanohole array technology offers the rapid, versatile, sensitive, and simple high throughput detection of biomolecules.