Abstract:Oncorhynchus mykiss form partially migratory populations with anadromous fish that undergo marine migrations and residents that complete their life cycle in fresh water. Many populations' anadromous components are threatened or endangered, prompting interest in understanding ecological and evolutionary processes underlying anadromy and residency. In this paper, we synthesize information to better understand genetic and environmental influences on O. mykiss life histories, identify critical knowledge gaps, and suggest next steps. Anadromy and residency appear to reflect interactions among genetics, individual condition, and environmental influences. First, an increasing body of literature suggests that anadromous and resident individuals differ in the expression of genes related to growth, smoltification, and metabolism. Second, the literature supports the conditional strategy theory, where individuals adopt a life history pattern based on their conditional status relative to genetic thresholds along with ultimate effects of size and age at maturation and iteroparity. However, except for a generally positive association between residency and high lipid content plus a large attainable size in fresh water, the effects of body size and growth are inconsistent. Thus, individuals can exhibit plasticity in variable environments. Finally, patterns in anadromy and residency among and within populations suggested a wide range of possible environmental influences at different life stages, from freshwater temperature to marine survival. Although we document a number of interesting correlations, direct tests of mechanisms are scarce and little data exist on the extent of residency and anadromy. Consequently, we identified as many data gaps as conclusions, leaving ample room for future research.Résumé : Les truites arc-en-ciel (Oncorhynchus mykiss) forment des populations partiellement migratrices incluant des individus anadromes qui effectuent des migrations marines et des individus résidents dont le cycle biologique se déroule entièrement en eau douce. Les éléments anadromes de nombreuses populations sont menacés ou en voie de disparition, ce qui suscite un intérêt envers la compréhension des processus écologiques et évolutionnaires qui sous-tendent l'anadromie et la résidence. Nous présentons une synthèse de l'information disponible dans le but de mieux comprendre les influences génétiques et environnementales sur les cycles biologiques d'O. mykiss, de cerner les lacunes critiques en matière de connaissances et de proposer des avenues de recherche future. L'anadromie et la résidence semblent témoigner d'interactions entre la génétique, l'état des individus et des influences environnementales. D'abord, de plus en plus d'études donnent à penser que les individus anadromes et résidents diffèrent sur le plan de l'expression des gènes associés à la croissance, à la smoltification et au métabolisme. Deuxièmement, la documentation appuie la théorie de la stratégie conditionnelle selon laquelle les individus adoptent un m...

Phenotypic variation is critical for the long-term persistence of species and populations. Anthropogenic activities have caused substantial shifts and reductions in phenotypic variation across diverse taxa, but the underlying mechanism(s) (i.e., phenotypic plasticity and/or genetic evolution) and long-term consequences (e.g., ability to recover phenotypic variation) are unclear. Here we investigate the widespread and dramatic changes in adult migration characteristics of wild Chinook salmon caused by dam construction and other anthropogenic activities. Strikingly, we find an extremely robust association between migration phenotype (i.e., spring-run or fall-run) and a single locus, and that the rapid phenotypic shift observed after a recent dam construction is explained by dramatic allele frequency change at this locus. Furthermore, modeling demonstrates that continued selection against the spring-run phenotype could rapidly lead to complete loss of the spring-run allele, and an empirical analysis of populations that have already lost the spring-run phenotype reveals they are not acting as sustainable reservoirs of the allele. Finally, ancient DNA analysis suggests the spring-run allele was abundant in historical habitat that will soon become accessible through a large-scale restoration (i.e., dam removal) project, but our findings suggest that widespread declines and extirpation of the spring-run phenotype and allele will challenge reestablishment of the spring-run phenotype in this and future restoration projects. These results reveal the mechanisms and consequences of human-induced phenotypic change and highlight the need to conserve and restore critical adaptive variation before the potential for recovery is lost.

We reared juvenile Oncorhychus mykiss with low and high standard metabolic rates (SMR) under alternative thermal regimes to determine how these proximate factors influence life histories in a partially migratory salmonid fish. High SMR significantly decreased rates of freshwater maturation and increased rates of smoltification in females, but not males, after 1 year of rearing. Warmer water temperatures significantly decreased rates of freshwater maturation and increased rates of smoltification in both sexes. Variation in individual growth influenced the probability of adopting anadromy or freshwater residency as life histories, but produced paradoxical results. Individuals with the highest growth performance within their respective temperature treatments had a higher probability of freshwater maturation, but warmer temperatures decreased freshwater maturation despite significantly increasing somatic growth. Whole-body lipid content was significantly lower for fish reared in the warm temperature treatment, which may explain the decreased probability of freshwater maturation for individuals exposed to warmer temperatures. Our results indicate that changes in somatic growth induced by altered thermal regimes can influence the relationship between body size and the probability of maturation. Accordingly, somatic growth may not be a robust predictor of shifts in the prevalence of anadromy and residency in partially migratory salmonids when compared across thermal regimes.Résumé : Nous avons élevé des truites arc-en-ciel (Oncorhynchus mykiss) juvéniles caractérisées par des taux métaboliques standards (TMS) faibles et élevés dans différents régimes thermiques afin de déterminer l'influence de ces facteurs sur les cycles biologiques d'un salmonidé partiellement migrateur. Des TMS élevés se sont traduits par une réduction significative des taux de maturation en eau douce et une augmentation des taux de smoltification des femelles, mais non des mâles, après un an d'élevage. Des températures d'eau plus chaudes entraînaient une réduction significative des taux de maturation en eau douce et une augmentation des taux de smoltification des deux sexes. Les variations de la croissance individuelle ont eu une influence sur la probabilité d'adoption de l'anadromie ou de la résidence en eau douce comme types de cycle biologique, produisant toutefois des résultats paradoxaux. Une probabilité accrue de maturation en eau douce était associée aux individus présentant les plus fortes performances de croissance pour un traitement thermique donné, mais les températures plus chaudes, tout en accélérant de manière significative la croissance somatique, entraînaient une réduction de la maturation en eau douce. Le contenu lipidique corporel était significativement plus faible chez les poissons élevés à plus haute température, ce qui pourrait expliquer la plus faible probabilité de maturation en eau douce pour les individus exposés à des températures plus élevées. Nos résultats indiquent que les modifications de la croissance somatique provoq...

Pacific salmon (Oncorhynchus spp.) are at the center of social–ecological systems that have supported Indigenous peoples around the North Pacific Rim since time immemorial. Through generations of interdependence with salmon, Indigenous Peoples developed sophisticated systems of management involving cultural and spiritual beliefs, and stewardship practices. Colonization radically altered these social–ecological systems, disrupting Indigenous management, consolidating authority within colonial governments, and moving most harvest into mixed-stock fisheries. We review Indigenous management of salmon, including selective fishing technologies, harvest practices, and governance grounded in multigenerational place-based knowledge. These systems and practices showcase pathways for sustained productivity and resilience in contemporary salmon fisheries. Contrasting Indigenous systems with contemporary management, we document vulnerabilities of colonial governance and harvest management that have contributed to declining salmon fisheries in many locations. We suggest that revitalizing traditional systems of salmon management can improve prospects for sustainable fisheries and healthy fishing communities and identify opportunities for their resurgence.

In partially migratory species, such as Oncorhynchus mykiss, the emergence of life history phenotypes is often attributed to fitness trade-offs associated with growth and survival. Fitness trade-offs can be linked to reproductive tactics that vary between the sexes, as well as the influence of environmental conditions. We found that O. mykiss outmigrants are more likely to be female in nine populations throughout western North America (grand mean 65% female), in support of the hypothesis that anadromy is more likely to benefit females. This bias was not related to migration distance or freshwater productivity, as indicated by latitude. Within one O. mykiss population we also measured the resident sex ratio and did not observe a male bias, despite a high female bias among outmigrants in that system. We provide a simulation to demonstrate the relationship between sex ratios and the proportion of anadromy and show how sex ratios could be a valuable tool for predicting the prevalence of life history types in a population.