Certain common inherited variations in genes involved in tumor angiogenesis, progression and metastasis may contribute to cancer therapy outcome and prognosis by altering the gene expression and protein activity. In this report, we examined the effect of functional polymorphisms in MMP-1, MMP-2, MMP-3, VEGF, VEGFR2, FGFR4 and COX-2 genes on overall (OS) and progression-free survival (PFS) of 350 Caucasian patients with inoperable non-small cell lung cancer (NSCLC). The results of multivariate analysis indicated that VEGFR2 -906C and COX-2 -1195G alleles were strongly associated with poor OS and PFS (p 5 0.002 and 0.015, respectively, for OS; p 5 0.009 and 0.015, respectively, for PFS), while MMP-2 -1306 T allele carriers had significantly reduced PFS (p 5 0.010). Moreover, an increased risk of death and progression was significantly associated with the number of adverse alleles for VEGFR2/COX-2 (p 5 0.0005 for OS and 0.0006 for PFS in >1 adverse allele carriers) and VEGFR2/COX-2/MMP-2 combinations (p 5 0.0003 for OS and 0.0001 for PFS in patients with >2 adverse alleles). Finally, VEGFR2 TC/CC, COX-2 AG/GG and MMP-2 CT/TT genotypes as well as "at risk" allele combinations were identified as independent predictors of unfavorable OS and PFS in the group. In conclusion, the data suggest that selected VEGFR2, COX-2 and MMP-2 polymorphisms may be potential prognostic markers in unresectable NSCLC treated with radiotherapy with or without chemotherapy, although further validation studies are warranted to confirm our observations.The majority of non-small cell lung cancers (NSCLC) are inoperable at initial diagnosis due to advanced stage and/or comorbidities. The choice of treatment in inoperable NSCLC depends mainly on clinical stage and, most frequently, is limited to radiation therapy, chemotherapy or a combination of both. The prognosis, however, remains unsatisfactory because of relatively low response rates and high metastatic potential. Large inter-individual variability is also observed in the clinical course and treatment outcomes, being a result of molecular heterogeneity of the tumor and host factors.1 Therefore, there is a need for novel prognostic and predictive markers that can be detected in blood and used in a large group of NSCLC patients for whom tumor tissue is not readily accessible.Lung cancer progression, including tumor growth, invasion and metastasis, depends on extracellular matrix (ECM) remodeling in which matrix metalloproteinases (MMPs) play an active role. They are multifunctional zinc endopeptidases being important regulators of the tumor microenvironment controlling cell proliferation, migration, inflammation and apoptosis.2 Some MMPs, such as MMP-1, -2, -3, -7 or -9, also contribute to angiogenesis, for example, MMP-2 and -9 are known to release vascular endothelial growth factor (VEGF) and fibroblast growth factor (FGF) from ECM that, in turn, up-regulate the MMP expression. Angiogenesis is a complex, dynamic process of new blood vessels formation in which VEGF and VEGF receptor 2 (VEGF...