Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.
The lipid composition of natural populations of diatoms in the sea ice at McMurdo Sound was determined during the austral spring bloom of 1985, using and Iatroscan TLC–FID system. The major lipid classes in all samples were polar lipids (including phospholipid, glycolipid and chlorophyll) and triacylglycerol, with lesser proportions of free fatty acids. Total lipid increased through November and early December, reaching a maximum (3300 mg m−2 at Cape Armitage and 1800 mg m−2 at Erebus Ice Tongue) c. one week after the chlorophyll a maxima. This increase was largely attributable to a corresponding increase in triacylglycerol. At the lipid maxima, triacylglycerol/polar lipid ratios in the range 1.0 to 2.5 were observed. The dynamic variations in lipid class abundances indicate that profound changes in the physiology of sea-ice diatoms are occurring throughout the spring bloom. A range of sterols (C26–C30) were detected; 24-methylenecholesterol, brassicasterol and 24-ethylcholesterol were the major sterols at the Cape Armitage and Erebus sites. The similarity of the sterol profiles to those of Antarctic freshwater algal communities strongly indicates diatoms as a more probable source of C29 sterols in the freshwater lakes than cyanobacteria or other algal groups. The hydrocarbons isolated from sea-ice diatoms at all sites were dominated by two unsaturated components, n−C21:6 and a diunsaturated isoprenoid C25 alkene. Until this study, no biological source had been validated for the isoprenoid C25:2 diene, even though it has been detected in many estuarine and coastal sediments.
Ocean observations are critical in developing our understanding of the interaction between the ocean and climate. Detailed information about the nutrient composition of the ocean is achieved using in situ sensing and the collection and analysis of physical samples from research vessels. The analysis of nutrients underpins work in understanding both the carbon cycle and biological productivity in oceans. Although in situ sensors are becoming more common for some nutrients, the best and most reliable method for making these measurements is to conduct analysis of physical samples at sea. This article discusses the analysis and data processing methods developed by the hydrochemistry team at Commonwealth Scientific and Industrial Research Organisation (CSIRO) to provide repeatable and accurate analysis of nutrient samples at sea. Nutrients are measured by segmented flow analysis and data are processed using in-house software (Hydrology Processor [HyPro]). These methods were used during the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP) P15S voyage in 2016. Accuracy and precision of the analyses during the voyage was determined from measurement of the certified reference material for nutrients in seawater (RMNS) for silicate, phosphate, nitrate, and nitrite and is presented and discussed here. The accuracy of the silicate and phosphate RMNS measurements was within 1-3% of the certified values, and nitrate + nitrite within 1-2%. The precision for silicate, nitrate + nitrite, and phosphate was greater than 0.2%. The hydrochemistry team has established a standard operating procedure which assures the quality of nutrient data obtained is accurate and precise.
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