Predation is an interaction during which an organism kills and feeds on another organism. Past and current interest in studying predation in terrestrial habitats has yielded a number of methods to assess invertebrate predation events in terrestrial ecosystems. We provide a decision tree to select appropriate methods for individual studies. For each method, we then present a short introduction, key examples for applications, advantages and disadvantages, and an outlook to future refinements. Video and, to a lesser extent, live observations are recommended in studies that address behavioral aspects of predator–prey interactions or focus on per capita predation rates. Cage studies are only appropriate for small predator species, but often suffer from a bias via cage effects. The use of prey baits or analyses of prey remains are cheaper than other methods and have the potential to provide per capita predation estimates. These advantages often come at the cost of low taxonomic specificity. Molecular methods provide reliable estimates at a fine level of taxonomic resolution and are free of observer bias for predator species of any size. However, the current PCR‐based methods lack the ability to estimate predation rates for individual predators and are more expensive than other methods. Molecular and stable isotope analyses are best suited to address systems that include a range of predator and prey species. Our review of methods strongly suggests that while in many cases individual methods are sufficient to study specific questions, combinations of methods hold a high potential to provide more holistic insights into predation events. This review presents an overview of methods to researchers that are new to the field or to particular aspects of predation ecology and provides recommendations toward the subset of suitable methods to identify the prey of invertebrate predators in terrestrial field research.

Environmental microbes harbor an enormous pool of antibiotic and biocide resistance genes that can impact the resistance profiles of animal and human pathogens via horizontal gene transfer. Pseudomonas putida strains are ubiquitous in soil and water but have been seldom isolated from humans. We have established a collection of P. putida strains isolated from in-patients in different hospitals in France. One of the isolated strains (HB3267) kills insects and is resistant to the majority of the antibiotics used in laboratories and hospitals, including aminoglycosides, ß-lactams, cationic peptides, chromoprotein enediyne antibiotics, dihydrofolate reductase inhibitors, fluoroquinolones and quinolones, glycopeptide antibiotics, macrolides, polyketides and sulfonamides. Similar to other P. putida clinical isolates the strain was sensitive to amikacin. To shed light on the broad pattern of antibiotic resistance, which is rarely found in clinical isolates of this species, the genome of this strain was sequenced and analysed. The study revealed that the determinants of multiple resistance are both chromosomally-borne as well as located on the pPC9 plasmid. Further analysis indicated that pPC9 has recruited antibiotic and biocide resistance genes from environmental microorganisms as well as from opportunistic and true human pathogens. The pPC9 plasmid is not self-transmissible, but can be mobilized by other bacterial plasmids making it capable of spreading antibiotic resistant determinants to new hosts.

Apple is considered the most important fruit crop in temperate areas and profitable production depends on multiple ecosystem services, including the reduction of pest damage and the provision of sufficient pollination levels. Management approaches present an inherent trade‐off as each affects species differently. We quantified the direct and indirect effects of management (organic vs. integrated pest management, IPM) on species richness, ecosystem services, and fruit production in 85 apple orchards in three European countries. We also quantified how habit composition influenced these effects at three spatial scales: within orchards, adjacent to orchards, and in the surrounding landscape. Organic management resulted in 48% lower yield than IPM, and also that the variation between orchards was large with some organic orchards having a higher yield than the average yield of IPM orchards. The lower yield in organic orchards resulted directly from management practices, and from higher pest damage in organic orchards. These negative yield effects were partly offset by indirect positive effects from more natural enemies and higher flower visitation rates in organic orchards. Two factors other than management affected species richness and ecosystem services. Higher cover of flowering plants within and adjacent to the apple trees increased flower visitation rates by pollinating insects and a higher cover of apple orchards in the landscape decreased species richness of beneficial arthropods. The species richness of beneficial arthropods in orchards was uncorrelated with fruit production, suggesting that diversity can be increased without large yield loss. At the same time, organic orchards had 38% higher species richness than IPM orchards, an effect that is likely due to differences in pest management. Synthesis and applications. Our results indicate that organic management is more efficient than integrated pest management in developing environmentally friendly apple orchards with higher species richness. We also demonstrate that there is no inherent trade‐off between species richness and yield. Development of more environmentally friendly means for pest control, which do not negatively affect pollination services, needs to be a priority for sustainable apple production.

Pseudomonas putida strains are ubiquitous in soil and water but have also been reported as opportunistic human pathogens capable of causing nosocomial infections. In this study we describe the multilocus sequence typing of four P. putida strains (HB13667, HB8234, HB4184, and HB3267) isolated from in-patients at the Besançon Hospital (France). The four isolates (in particular HB3267) were resistant to a number of antibiotics. The pathogenicity and virulence potential of the strains was tested ex vivo and in vivo using different biological models: human tissue culture, mammalian tissues, and insect larvae. Our results showed a significant variability in the ability of the four strains to damage the host; HB13667 did not exhibit any pathogenic traits, HB4184 caused damage only ex vivo in human tissue cultures, and HB8234 had a deleterious effect in tissue culture and in vivo on rat skin, but not in insect larvae. Interestingly, strain HB3267 caused damage in all the model systems studied. The putative evolution of these strains in medical environments is discussed.

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Intensive agricultural management negatively affects both natural enemies of pests and pollinators. Such management also has the potential to adversely affect the ecosystem services that these communities confer. Organic management has been proposed as an alternative method to mitigate such problems by restoring the services provided by arthropod communities. We evaluated the effect of organic management on two ecosystem services provided by arthropods in apple orchards: pollination and biological control. We used relative decrease in colonies to assess biological control of the major apple aphid pest, and measured pollination through fruit set, number of seeds per apple and pollinator visitation. Additionally, we monitored the organisms responsible for pollination and biological control services and established the impact of pollination on apple quality. Our results show a strong effect of organic management on biological control and on the temporal dynamic of natural enemy–pest interactions. Parameters such as aphid colony suppression, first and repeated occurrence of natural enemies, natural enemy species evenness and natural enemy abundance were significantly higher in organic compared to conventional orchards. Predatory bugs were the natural enemies best‐affected by organic management and played a key role in early predation of aphids preventing colony growth. In this instance, pollination was not influenced by organic management. It is likely due to the temporal scale at which this service is delivered, a scale that differs greatly from biological control, combined with differences in the dispersal capacity of the organisms involved. Fruit weight, calcium, potassium and magnesium content were positively affected by pollination success. Synthesis and applications. We found that organic management in apple orchards preserves the local natural enemy community, and specifically predatory bug populations, essential for early aphid colony suppression. Our results suggest that, in conventional orchards, local management options that decrease or even eliminate pesticide use early in the season would increase the biological control of aphids. This would lead to reduction in apple damage at harvest. Our results on pollination success indicate that the implementation of organic management at orchard scale does not enhance pollination services for apple growers.

Local agri-environmental schemes, including hedgerows, flowering strips, organic management, and a landscape rich of in semi-natural habitat patches, are assumed to enhance the presence of beneficial arthropods and their contribution to biological control in fruit crops. We studied the influence of local factors (orchard management and adjacent habitats) and of landscape composition on the abundance and community composition of predatory arthropods in apple orchards in three European countries. To elucidate how local and landscape factors influence natural enemy effectiveness in apple production systems, we calculated community energy use as a proxy for the communities' predation potential based on biomass and metabolic rates of predatory arthropods. Predator communities were assessed by standardised beating samples taken from apple trees in 86 orchards in Germany, Spain and Sweden.Orchard management included integrated production (IP; i.e. the reduced and targeted application of synthetic agrochemicals), and organic management practices in all three countries. Predator communities differed between management types and countries. Several groups, including beetles (Coleoptera), predatory bugs (Heteroptera), flies (Diptera) and spiders (Araneae) benefited from organic management depending on country. Woody habitat and IP supported harvestmen (Opiliones). In both IP and organic orchards, we detected aversive influences of a high-quality surrounding landscape on some predator groups: for example, high covers of woody habitat reduced earwig abundances in German orchards but enhanced their abundance in Sweden, and high natural plant species richness tended to reduce predatory bug abundance in Sweden and IP orchards in Spain. We conclude that predatory arthropod communities and influences of local and landscape factors are strongly shaped by orchard management, and that the influence of management differs between countries. Our results indicate that organic management improves the living conditions for effective predator communities.

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