Salt is a natural component of the Australian landscape to which a number of biota inhabiting rivers and wetlands are adapted. Under natural flow conditions periods of low flow have resulted in the concentration of salts in wetlands and riverine pools. The organisms of these systems survive these salinities by tolerance or avoidance. Freshwater ecosystems in Australia are now becoming increasingly threatened by salinity because of rising saline groundwater and modification of the water regime reducing the frequency of high-flow (flushing) events, resulting in an accumulation of salt. Available data suggest that aquatic biota will be adversely affected as salinity exceeds 1000 mg L–1 (1500 EC) but there is limited information on how increasing salinity will affect the various life stages of the biota. Salinisation can lead to changes in the physical environment that will affect ecosystem processes. However, we know little about how salinity interacts with the way nutrients and carbon are processed within an ecosystem. This paper updates the knowledge base on how salinity affects the physical and biotic components of aquatic ecosystems and explores the needs for information on how structure and function of aquatic ecosystems change with increasing salinity.

Summary 1. A long‐lived bank of propagules consisting of eggs, seeds and spores is one mechanism that allows aquatic communities to survive drought. A drying (drought) event is, for aquatic organisms in a temporary wetland, a phase from which communities must recover. Such a dry phase is often considered a disturbance but should not be considered adverse or catastrophic for the organisms that have evolved to live in temporarily wet habitats. 2. This paper explores the parallels between the egg bank of zooplankton and the seed bank of aquatic plants as means of survival in temporary wetlands. The resilience of communities in temporary wetland ecosystems is assessed by examining dormancy, hatching, germination, establishment and reproduction of animals and plants from the egg and seed banks of wetlands with a range of wetting and drying regimes. 3. Both the zooplankton and aquatic plants of the temporary wetlands studied rely on their egg and seed banks as a means for surviving drying. These communities recover after the disturbance of drying by means of specific patterns of dormancy, dormancy breakage, hatching, germination, establishment and reproduction. Spatial and temporal patterns of species richness allow resilience through dormancy, as not all species are present at all sites and not all species hatch and germinate at the same time. Multiple generations in the egg and seed bank and complexity of environmental cues for dormancy breakage also contribute to the ecosystem's ability to recover after a drying event. A persistent egg and seed bank allows species‐rich communities to hatch, germinate and develop rapidly once dormancy is broken. Rapid establishment of species‐rich communities that reproduce rapidly and leave many propagules in the egg and seed bank also facilitates community recovery on flooding of a temporary wetland after a drying event. 4. To maintain the diversity of temporary wetland communities through droughts and floods we need to manage the dry and wet phases of wetlands. To conserve a wide range of wetland types, we need to maintain a variety of hydrological patterns across the landscape.

1. This paper explores soil seed bank composition and its contribution to the vegetation dynamics of a hydrologically variable desert floodplain in central Australia: the Cooper Creek floodplain. We investigated patterns in soil seed bank composition both temporally, in response to flooding (and drying), and spatially, with relation to flood frequency. Correlations between extant vegetation and soil seed bank composition are explored with respect to flooding. 2. A large and diverse germinable soil seed bank was detected comprising predominantly annual monocot and annual forb species. Soil seed bank composition did not change significantly in response to a major flood event but some spatial patterns were detected along a broad flood frequency gradient. Soil seed bank samples from frequently flooded sites had higher total germinable seed abundance and a greater abundance of annual monocots than less frequently flooded sites. In contrast, germinable seeds of perennial species belonging to the Poaceae family were most abundant in soil seed bank samples from rarely flooded sites. 3. Similarity between the composition of the soil seed bank and extant vegetation increased following flooding and was greatest in more frequently flooded areas of the floodplain, reflecting the establishment of annual species. The results indicate that persistent soil seed banks enable vegetation in this arid floodplain to respond to unpredictable patterns of flooding and drying.

1. Reduction in diversity of both freshwater aquatic and terrestrial ecosystems has been attributed to salinity increase and such increases are a symptom of changes to land use. Hydrological alteration to ground and surface water are likely to be associated with salinity increase and its influence on biodiversity. However the combined effects of salinity and hydrology on aquatic biodiversity have not been elucidated fully in either field or experimental situations. 2. The effect of salinity and water regime on the biota in sediments from seven wetlands from inland south-eastern Australia was tested experimentally using germination of aquatic plant seeds (five salinity and two water levels) and emergence of zooplankton eggs (five salinity levels). Salinity levels were <300, 1000, 2000, 3000, 5000 mg L )1 and water regimes were damp (waterlogged) and submerged. 3. Aquatic plant germination and zooplankton hatching was not consistent for all seven wetland sediments. Four of the wetland sediments, Narran Lakes, Gwydir Wetlands, Macquarie Marshes and Billybung Lagoon showed similar responses to salinity and water regime but the other three wetland sediments from Lake Cowal, Great Cumbung Swamp and Darling Anabranch did not. 4. As salinity increased above 1000 mg L )1 there was a decrease in the species richness and the abundance of biota germinating or hatching from sediment from four of the wetlands. 5. Salinity had a particularly strong effect in reducing germination from sediments in damp conditions when compared to the flooded conditions. In parallel, salts accumulated in the sediment in damp conditions but did not in flooded conditions. 6. There is potential for increasing salinity in freshwater rivers and wetlands to decrease the species richness of aquatic communities and thus of the wetland community as a whole, resulting in loss of wetland biodiversity. This reduction in diversity varies between wetlands and is at least partly related to hydrology. For aquatic plants the reduction in diversity will be more marked for plants germinating from seed banks at the edges of wetlands where plants are not completely submerged than for the same seed bank germinating in submerged conditions.

Aquatic plants include a variety of life forms and functional groups that are adapted to diverse wetland habitats. Both similarities and differences in seed and seed‐bank characteristics were discovered in comparisons of Australian (New South Wales) temporary upland wetlands with a North American (New Jersey) tidal freshwater marsh having both natural and constructed wetlands. In the former, flooding and drying are unpredictable and in the latter water levels vary diurnally and substrate is constantly moist. The hydrologic regimen provides the overriding selective force, with climate an important second factor. Other factors related to water level, such as oxygen availability, temperature and light, vary spatially and temporally, influencing germination processes, germination rates and seedling establishment. Seed and seed‐bank characteristics (size, desiccation and inundation tolerance, germination cues and seed‐bank longevity and depletion) differ, with the Australian temporary wetland being more similar to the small‐seeded persistent seed bank of the constructed wetland site than to the natural tidal freshwater site with its larger seeds, transient seed bank and seasonal spring germination. Some non‐spring germination can occur in the tidal constructed wetland if the soil is disturbed. In contrast, seeds in the temporary Australian wetlands germinated in response to wet/dry cycles rather than to season. Functional groups (e.g. submerged, amphibious) are more diverse in the Australian temporary wetlands, where all species tolerate drying. We suggest that the amphibious zone, with its hydrologic gradient, is the site of selection pressure determining establishment of wetland plants from seed. In this zone, multiple selective factors vary spatially and temporally.