Differences in methylmercury (CH 3 Hg) production normalized to the sulfate reduction rate (SRR) in various species of sulfate-reducing bacteria (SRB) were quantified in pure cultures and in marine sediment slurries in order to determine if SRB strains which differ phylogenetically methylate mercury (Hg) at similar rates. Cultures representing five genera of the SRB (Desulfovibrio desulfuricans, Desulfobulbus propionicus, Desulfococcus multivorans, Desulfobacter sp. strain BG-8, and Desulfobacterium sp. strain BG-33) were grown in a strictly anoxic, minimal medium that received a dose of inorganic Hg 120 h after inoculation. The mercury methylation rates (MMR) normalized per cell were up to 3 orders of magnitude higher in pure cultures of members of SRB groups capable of acetate utilization (e.g., the family Desulfobacteriaceae) than in pure cultures of members of groups that are not able to use acetate (e.g., the family Desulfovibrionaceae). Little or no Hg methylation was observed in cultures of Desulfobacterium or Desulfovibrio strains in the absence of sulfate, indicating that Hg methylation was coupled to respiration in these strains. Mercury methylation, sulfate reduction, and the identities of sulfate-reducing bacteria in marine sediment slurries were also studied. Sulfate-reducing consortia were identified by using group-specific oligonucleotide probes that targeted the 16S rRNA molecule. Acetate-amended slurries, which were dominated by members of the Desulfobacterium and Desulfobacter groups, exhibited a pronounced ability to methylate Hg when the MMR were normalized to the SRR, while lactate-amended and control slurries had normalized MMR that were not statistically different. Collectively, the results of pure-culture and amended-sediment experiments suggest that members of the family Desulfobacteriaceae have a greater potential to methylate Hg than members of the family Desulfovibrionaceae have when the MMR are normalized to the SRR. Hg methylation potential may be related to genetic composition and/or carbon metabolism in the SRB. Furthermore, we found that in marine sediments that are rich in organic matter and dissolved sulfide rapid CH 3 Hg accumulation is coupled to rapid sulfate reduction. The observations described above have broad implications for understanding the control of CH 3 Hg formation and for developing remediation strategies for Hg-contaminated sediments.The presence of Hg in freshwater and marine environments continues to generate concerns related to biological exposure. The incident involving Hg poisoning in Minamata Bay, Japan, illustrated the potential hazards associated with chronic exposure to Hg, particularly CH 3 Hg (24). The lipophilic nature of CH 3 Hg enhances its ability to be bioaccumulated compared to inorganic Hg, and this results in enhanced biomagnification of CH 3 Hg in the food chain (15,23,30). Faust and Osman (12) have reported that typically 90 to 99% of the total Hg in the environment is associated with the sediment, while Ͻ1% of the total Hg accumulates in th...

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Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Little is known concerning the factors which might control the distribution of viral abundance in oceanic environments and the relationship of viruses to the oceanic DNA pool. We have measured the distribution of viruses, bacterioplankton and phytoplankton in the subtropical southeastern Gulf of Mexico and related these parameters to the distribution of DNA (dissolved and particulate) in these waters. Viral direct counts were 4.6 to 27 X 106ml-' in Tampa Bay (Florida, USA), 3.8 to 8.5 X 105 ml-' in all oceanic euphotic zone samples and 1.4 to 4.7 X 104 ml-' in deep (200 to 2500 m) waters, and were highly correlated with chlorophyll a concentrations (r = 0.97), particulate DNA (r = 0.96) and bacterial direct counts (BDC, r = 0.94). A vertical profile indicated a subsurface euphotic zone maximum in viral direct counts that corresponded with maxima for particulate and dissolved DNA, and picocyanobacterial direct counts. For all stations, the vertical distribution of viruses most closely followed the distribution of particulate DNA. Bacterioplankton made the largest contnbution ( z 50 %) to the particulate (> 0.2 pm) DNA pool while phytoplankton averaged 8 %. A predictive model for particulate DNA was determined to be: Particulate DNA (pg 1-') = 4.94 X 10-"BDC I-') + 2.31 [chlorophyll a (pg I-')] + 2.77. DNA in viral particles was estimated to comprise only ca 4 % of the dissolved DNA pool.

A quantitative framework was developed which estimates mercury methylation rates (MMR) in sediment cores based on measured sulfate reduction rates (SRR) and the community composition sulfate-reducing bacterial consortia. MMR and SRR as well as group-specific 16S rRNA concentrations (as quantified by probe signal) associated with sulfate-reducing bacteria (SRB) were measured in triplicate cores of saltmarsh sediments. Utilizing previously documented conversion factors in conjunction with field observations of sulfate reduction, MMR were calculated, and the results were compared to experimentally derived measurements of MMR. Using our novel field data collected in saltmarsh sediment where sulfate reduction activity is high, calculated and independently measured MMR results were consistently within an order of magnitude and displayed similar trends with sediment depth. In an estuarine sediment where sulfate reduction activity was low, calculated and observed MMR diverged by greater than an order of magnitude, but again trends with depth were similar. We have expanded the small database generated to date on mercury methylation in sulfur-rich marine sediments. The quantitative frameworkwe have developed further elucidates the coupling of mercury methylation to sulfate reduction by basing calculated rates of mercury methylation on the activity and community composition of sulfate-reducing bacteria. The quantitative framework may also provide a promising alternative to the difficult and hazardous determination of MMR using radiolabeled mercury.

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The 18S rRNA gene from Hematodinum sp., a parasitic dinoflagellate that infects blue crabs, was amplified, cloned, and sequenced. The sequence showed a high similarity (95% at the nucleotide level) to sequences obtained from other dinoflagellate species, including both free-living and symbiotic species. Sequence similarity was much lower when compared with parasites of other marine invertebrates with similar life histories and with the 18S rRNA gene from the blue crab. Based on comparison of sequence alignments between Hematodinium, other dinoflagellate species, protozoan pathogens of oysters, and blue crab 18S rRNA gene sequences, 2 sets of PCR primers that specifically amplified fragments of the Hematodinium 18S rRNA gene were developed and tested.

A PCR approach was used to construct a database of nasA genes (called narB genes in cyanobacteria) and to detect the genetic potential for heterotrophic bacterial nitrate utilization in marine environments. A nasA-specific PCR primer set that could be used to selectively amplify the nasA gene from heterotrophic bacteria was designed. Using seawater DNA extracts obtained from microbial communities in the South Atlantic Bight, the Barents Sea, and the North Pacific Gyre, we PCR amplified and sequenced nasA genes. Our results indicate that several groups of heterotrophic bacterial nasA genes are common and widely distributed in oceanic environments.