AimTo determine the origin of the high diversity of birds and other animals and plants in Amazonia. Previous hypotheses are: palaeogeography hypothesis, river hypothesis, riverrefuge hypothesis, refuge hypothesis, disturbance-vicariance hypothesis, gradient hypothesis, pest-pressure hypothesis, intermediate disturbance hypothesis, riverine disturbance hypothesis, models of fine-scale habitat heterogeneity, lake hypothesis, and museum hypothesis.Methods At present there is agreement between areas of high species diversity and sites located over 100 m. As these sites would have been islands during a sea-level rise of this value, it was important to determine the probable distribution of these islands in Amazonia during a marine transgression. For that purpose, I traced the 100 m contour line from topographic maps.Results Two broad marine transgressions would have been produced from the Atlantic Ocean via the Amazon and Orinoco rivers. Two very large islands would have been formed to the north of the Amazon River, and other islands and archipelagos would have been formed along the coastal lowlands of Guiana, and at the periphery of the Amazon basin. The area located between the Solimões and Negro rivers and in the lower Branco would have been completely covered by the sea.Main conclusions A substantial part of the high diversity of forest and nonforest birds in lowland Amazonia can be hypothetysed to have originated during sea-level rises of about 100 m in the Quaternary and late Tertiary. These transgressions would have fragmented the Amazonian lowland into a large number of true islands and archipelagos, thus favouring active allopatric speciation. Values appreciably higher than 100 m above the present sealevel during previous periods of the Tertiary would have produced segregation of the biota earlier than the Tertiary-Quaternary boundary. Sea-level rises and vegetational changes (by aridity or cooling) would thus have driven the speciation pump, and local disturbances and other processes, would maintain the diversity.

Giardia is an intestinal parasite that belongs to the earliest diverging branch of the eukaryotic lineage of descent. Giardia undergoes adaptation for survival outside the host's intestine by differentiating into infective cysts. Encystation involves the synthesis and transport of cyst wall constituents to the plasma membrane for release and extracellular organization. Nevertheless, little is known about the molecular events related to cyst wall biogenesis in Giardia. Among the components of the cyst wall there are two proteins that we have previously identified and characterized: CWP1 (26 kDa) and CWP2 (39 kDa). Expression of these proteins is coordinately induced, and both concentrated within encystation-specific secretory vesicles before their extracellular polymerization. Although highly similar to each other at the amino terminus, CWP2 includes a COOHterminal 121-amino acid extension. Here, we show that this extension, rich in basic residues, is cleaved from CWP2 before cyst wall formation by an intracellular cysteine proteinase activity, which is induced during encystation like CWPs. Specific inhibitors prevent release of cyst wall materials, abolishing cyst wall formation. We also report the purification, cloning, and characterization of the encystation-specific cysteine proteinase responsible for the proteolytic processing of CWP2, which is homologue to lysosomal cathepsin C. Encystation-specific cysteine proteinase ESCP possesses unique characteristics compared with cathepsins from higher eukaryotes, such as a transmembrane domain and a short cytoplasmic tail. These features make this enzyme the most divergent cathepsin C identified to date and provide new insights regarding cyst wall formation in Giardia.

Aim To assess the correspondence between current avian distributions in the lowlands of northern South America with respect to the hypothesized importance of sea level rise and other events over the past 15 million years on speciation.Location Tropical lowlands of north-western South America. MethodsTo establish which bird taxa may have originated in each area of endemism, I examined the ranges of all bird species occurring in the Pacific and the Caribbean lowlands. To determine land and sea distribution during a sea level rise of 100 m in north-western South America and eastern Central America, I traced the 100 m contour line from the Geoatlas of Georama and the Global 30-Arc-Second Elevation Data (GTOPO30) produced by the US Geological Survey. Results During a sea level rise of ∼ 100 m, marine incursions would have occurred from the Caribbean Sea and the Pacific Ocean. Several areas of tropical forest and dry/arid vegetation would have been isolated, currently known as the Darién, Chocó, Nechí, Catatumbo, Tumbesian and Guajiran areas of animal and plant endemism. Main conclusions A large part of the high diversity of forest and nonforest birds and other animals and plants in the Pacific rain forest and the Caribbean woodland likely arose as the result of sea level rises, dispersal and other geological and climatic events.

The Uruguay River starts in Serra do Mar in Brazil, runs through the Paranense forest, and flows southward through grassland and savannas. It has a continuous gallery forest of 750 km from the southern border of the Paranense forest to the river mouth. The gallery forest extends for 100 km more along the Río de la Plata. 125 (68.7%) of the 182 species of forest birds recorded in the southern Paranense forest penetrate into the gallery forest of the Uruguay River and only 13 (7.1%) reach the end of the gallery forest (Punta Lara). The number of bird species is inversely correlated ( r 2 = 0.942) with distance and the slope of the regression is 58.10. This means a decline in diversity with 32% of species lost per unit distance. A hundred and eighty forest tree species were recorded in the southern Paranense forest, of which 113 (62.8%) penetrate into the gallery forest of the Uruguay River, and 28 (15.6%) reach Punta Lara. The number of tree species is inversely correlated ( r 2 = 0.976) with distance and the slope of the regression is − 45.62. This means a decline in diversity with 25% of species lost per unit distance. The Uruguay River enables the dispersal of many species of forest birds and trees from the rain forest, but species richness tends to decrease with increased distance from the source area. A clear association pattern was found for birds between size, diet, habitat use and distance reached into the gallery forest. Species of smaller body size, granivores, insectivores and those that use both the interior and exterior parts of the gallery forest advanced noticeably further along the river than larger species, carnivores, nectarivores or frugivores, and those that frequent only a part of the forest. Similarly, a clear association between dispersal mechanism, water dependence and distance reached into the gallery forest was found for trees. Species with vegetative reproduction, zoochorous species and riparian species advanced markedly longer distances along the river than, anemochorous species and non-riparian species.

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The breeding avifauna of 25 woodland fragments (0.85–280 ha) was studied between 1996 and 2004 in Córdoba, Argentina. A distinctive feature of the avifauna of the fragments studied is the low area requirement of most of the species. Of the 54 woodland species recorded, 32 (59.3%) require c. 1 ha and 43 (79.6%) needed no more than 3 ha. Also noticeable is the relatively high number of individuals of most of the species. Both characteristics suggest a good tolerance to fragmentation. However, nine species (16.7%), the area‐sensitive species, need fragments of 80 ha or larger. Moreover, eight resident species have apparently become extinct in the fragments that were studied, including the five large species that originally inhabited the area. Proportional odds and log linear models were fitted to relate the minimum area requirements of these species to various ecological characteristics (body size, diet, habitat use, migratory status, and nest type). Closed nesters, resident, woodland exterior, and medium‐size species were the groups requiring larger areas. No apparent pattern was observed between area requirements and diet. A recent law prohibits woodland removal, which is a positive step towards the conservation of the fragments. The results suggest that as long as the present amount of woodland is maintained, the situation of the avifauna of the fragments is relatively secure, at least in the short term.