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We have analyzed decade‐long methane flux data set from a boreal fen, Siikaneva, together with data on environmental parameters and carbon dioxide exchange. The methane flux showed seasonal cycle but no systematic diel cycle. The highest fluxes were observed in July–August with average value of 73 nmol m−2 s−1. Wintertime fluxes were small but positive, with January–March average of 6.7 nmol m−2 s−1. Daily average methane emission correlated best with peat temperatures at 20–35 cm depths. The second highest correlation was with gross primary production (GPP). The best correspondence between emission algorithm and measured fluxes was found for a variable‐slope generalized linear model (r2 = 0.89) with peat temperature at 35 cm depth and GPP as explanatory variables, slopes varying between years. The homogeneity of slope approach indicated that seasonal variation explained 79% of the sum of squares variation of daily average methane emission, the interannual variation in explanatory factors 7.0%, functional change 5.3%, and random variation 9.1%. Significant correlation between interannual variability of growing season methane emission and that of GPP indicates that on interannual time scales GPP controls methane emission variability, crucially for development of process‐based methane emission models. Annual methane emission ranged from 6.0 to 14 gC m−2 and was 2.7 ± 0.4% of annual GPP. Over 10‐year period methane emission was 18% of net ecosystem exchange as carbon. The weak relation of methane emission to water table position indicates that space‐to‐time analogy, used to extrapolate spatial chamber data in time, may not be applicable in seasonal time scales.

Abstract. Wetlands are one of the most significant natural sources of methane (CH 4 ) to the atmosphere. They emit CH 4 because decomposition of soil organic matter in waterlogged anoxic conditions produces CH 4 , in addition to carbon dioxide (CO 2 ). Production of CH 4 and how much of it escapes to the atmosphere depend on a multitude of environmental drivers. Models simulating the processes leading to CH 4 emissions are thus needed for upscaling observations to estimate present CH 4 emissions and for producing scenarios of future atmospheric CH 4 concentrations. Aiming at a CH 4 model that can be added to models describing peatland carbon cycling, we composed a model called HIMMELI that describes CH 4 build-up in and emissions from peatland soils. It is not a full peatland carbon cycle model but it requires the rate of anoxic soil respiration as input. Driven by soil temperature, leaf area index (LAI) of aerenchymatous peatland vegetation, and water table depth (WTD), it simulates the concentrations and transport of CH 4 , CO 2 , and oxygen (O 2 ) in a layered one-dimensional peat column. Here, we present the HIMMELI model structure and results of tests on the model sensitivity to the input data and to the description of the peat column (peat depth and layer thickness), and demonstrate that HIMMELI outputs realistic fluxes by comparing modeled and measured fluxes at two peatland sites. As HIMMELI describes only the CH 4 -related processes, not the full carbon cycle, our analysis revealed mechanisms and dependencies that may remain hidden when testing CH 4 models connected to complete peatland carbon models, which is usually the case. Our results indicated that (1) the model is flexible and robust and thus suitable for different environments; (2) the simulated CH 4 emissions largely depend on the prescribed rate of anoxic respiration; (3) the sensitivity of Published by Copernicus Publications on behalf of the European Geosciences Union. 4666M. Raivonen et al.: HelsinkI Model of MEthane buiLd-up and emIssion for peatlands the total CH 4 emission to other input variables is mainly mediated via the concentrations of dissolved gases, in particular, the O 2 concentrations that affect the CH 4 production and oxidation rates; (4) with given input respiration, the peat column description does not significantly affect the simulated CH 4 emissions in this model version.