Glomalin released from arbuscular mycorrhizal fungi (AMF) has important roles in soil nutrient cycles, whereas contributing to glomalin-related soil protein (GRSP) fractions to soil nitrogen (N) is unknown. In this study, a two-chambered root-box that was divided into root chamber (root and mycorrhizal fungi hypha) and hypha chamber (free of the root) was used, and three AMF species including Diversispora epigaea, Paraglomus occultum, and Rhizoglomus intraradices were separately inoculated into the root chamber. Plant growth, soil total N, N content of purified GRSP fractions, and its contribution to soil total N, and leaf and root N contents were analysed. After four months, total biomass and root total length, surface area, and volume were improved by all AMF inoculations. AMF inoculations dramatically increased soil total N content in two chambers. The N content of purified easily extractable GRSP (EE-GRSP) and difficultly extractable GRSP (DE-GRSP) was 0.10 ± 0.01 mg/g and 0.16 ± 0.02 mg/g, respectively, accounted for 15.6 ± 1.6% and 18.1 ± 1.8% of soil total N, respectively. AMF inoculations stimulated the N accumulation in EE-GRSP and DE-GRSP, especially in the hypha chamber. It concluded that GRSP, especially DE-GRSP, acts as a soil N pool accounting for 33.8 ± 1.9% of soil total N in orchards.
A large number of non-synonymous single-nucleotide polymorphisms (nsSNPs) have been found in human genome, but there is poor knowledge on the relationship between the genotype and phenotype of these nsSNPs. Human ATP-binding cassette (ABC) transporters are able to transport a number of important substrates including endogenous and exogenous compounds. This study aimed to predict the phenotypical impact of nsSNPs of human ABC transporter genes, and the predicted results were further validated by reported phenotypical data from site-directed mutagenesis and clinical genetic studies. One thousand and six hundred thirty-two nsSNPs were found from 49 human ABC transporter genes. Using the PolyPhen and SIFT algorithms, 41.8-53.6% of nsSNPs in ABC transporter genes were predicted to have an impact on protein function. The prediction accuracy was up to 63-85% when compared with known phenotypical data from in vivo and in vitro studies. There was a significant concordance between the prediction results using SIFT and PolyPhen. Of nsSNPs predicted as deleterious, the prediction scores by SIFT and PolyPhen were significantly related to the number of nsSNPs with known phenotypes confirmed by experimental and human studies. The amino acid substitution variants are supposed to be the pathogenetic basis of increased susceptibility to certain diseases with Mendelian or complex inheritance, altered drug resistance and altered drug clearance and response. Predicting the phenotypic consequence of nsSNPs using computational algorithms may provide a better understanding of genetic differences in susceptibility to diseases and drug response. The prediction of nsSNPs in human ABC transporter genes would be useful hints for further genotype-phenotype studies.
The three-dimensional
(3D) printing technology combined with bone
tissue engineering has become one of the major methods for mandibular
reconstruction. However, the key factor retarding mandible reconstruction
is the barrier of understanding and achieving the complex 3D gridwork
formed by the trabeculae. This study innovatively constructed a low-temperature
3D printing silk fibroin/collagen/hydroxyapatite (SF/COL/HA) composite
scaffold with a stable structure and remarkable biocompatibility.
We designed three kinds of six-layer scaffolds with mixed fiber cross-angle
structures (FCAS) of [0°/90°/0°/90°/0°/90°],
[0°/45°/90°/135°/180°/225°] and [0°/30°/60°/90°/120°/150°].
Material properties of these scaffolds such as porosity, water absorption
rate, X-ray diffraction, Fourier transform infrared spectroscopy,
and compression performance were detected. Then, the MC3T3-E1 cells
were seeded on these scaffolds and the adhesion, proliferation, and
differentiation were investigated. To be more convincing, the same
experiments were performed on another polycaprolactone/hydroxyapatite
scaffold. The results suggested that the changes of FCAS affected
the mechanical properties of 3D printed scaffolds and performance
of seeded cells. Besides, the 90° FCAS significantly enhanced
the compressive modulus in two groups and were more conducive to the
cell proliferation and osteogenesis, which provided evidence for exploring
the influence of FCAS on the properties of scaffolds and the application
of two composite scaffolds in tissue regeneration.
Plants have evolved a number of defense and adaptation responses to protect themselves against challenging environmental stresses. Genes containing a heavy metal associated (HMA) domain are required for the spatiotemporal transportation of metal ions that bind with various enzymes and co-factors within the cell. To uncover the underlying mechanisms mediated by StHMA genes, we identified 36 gene members in the StHMA family and divided them into six subfamilies by phylogenetic analysis. The StHMAs had high collinearity and were segmentally duplicated. Structurally, most StHMAs had one HMA domain, StHIPPc and StRNA1 subfamilies had two, and 13 StHMAs may be genetically variable. The StHMA gene structures and motifs varied considerably among the various classifications, this suggests the StHMA family is diverse in genetic functions. The promoter analysis showed that the StHMAs had six main cis-acting elements with abiotic stress. An expression pattern analysis revealed that the StHMAs were expressed tissue specifically, and a variety of abiotic stresses may induce the expression of StHMA family genes. The HMA transporter family may be regulated and expressed by a series of complex signal networks under abiotic stress. The results of this study may help to establish a theoretical foundation for further research investigating the functions of HMA genes in S. tuberosum to elucidate their regulatory role in the mechanism governing the response of plants to abiotic stress.
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