BackgroundAn ancient cyanobacterial incorporation into a eukaryotic organism led to the evolution of plastids (chloroplasts) and subsequently to the origin of the plant kingdom. The underlying mechanism and the identities of the partners in this monophyletic event remain elusive.Methodology/Principal FindingsTo shed light on this evolutionary process, we sequenced the genome of a cyanobacterium residing extracellularly in an endosymbiosis with a plant, the water-fern Azolla filiculoides Lam. This symbiosis was selected as it has characters which make it unique among extant cyanobacterial plant symbioses: the cyanobacterium lacks autonomous growth and is vertically transmitted between plant generations. Our results reveal features of evolutionary significance. The genome is in an eroding state, evidenced by a large proportion of pseudogenes (31.2%) and a high frequency of transposable elements (∼600) scattered throughout the genome. Pseudogenization is found in genes such as the replication initiator dnaA and DNA repair genes, considered essential to free-living cyanobacteria. For some functional categories of genes pseudogenes are more prevalent than functional genes. Loss of function is apparent even within the ‘core’ gene categories of bacteria, such as genes involved in glycolysis and nutrient uptake. In contrast, serving as a critical source of nitrogen for the host, genes related to metabolic processes such as cell differentiation and nitrogen-fixation are well preserved.Conclusions/SignificanceThis is the first finding of genome degradation in a plant symbiont and phenotypically complex cyanobacterium and one of only a few extracellular endosymbionts described showing signs of reductive genome evolution. Our findings suggest an ongoing selective streamlining of this cyanobacterial genome which has resulted in an organism devoted to nitrogen fixation and devoid of autonomous growth. The cyanobacterial symbiont of Azolla can thus be considered at the initial phase of a transition from free-living organism to a nitrogen-fixing plant entity, a transition process which may mimic what drove the evolution of chloroplasts from a cyanobacterial ancestor.

Extracellular matrix (ECM) is closely correlated with tumor cell growth, proliferation, metastasis and angiogenesis, etc. Hyaluronic acid (HA) is a component of the ECM, and hyaluronidase (HAase) is a HA-degrading endoglycosidase. Levels of HAase are elevated in many cancers. Hyaluronidase-1 (HYAL1) is the major tumor-derived HAase. In this study, we detected HYAL1 expression levels in breast cancer cells and tissues, and measured the amount HAase activity in breast cancer cells. Compared with nonmalignant breast cell line HBL-100 and normal breast tissues, HYAL1 were overexpressed in breast cancer cell lines MDA-MB-231, MCF-7, invasive duct cancer tissues and metastatic lymph nodes, respectively. Accordingly, the amount HAase activity in MDA-MB-231 and MCF-7 was higher than that in HBL-100. In addition, knockdown of HYAL1 expression in MDA-MB-231 and MCF-7 cells resulted in decreased cell growth, adhesion, invasion and angiogenesis potential. Meantime, the HYAL1 knockdown markedly inhibited breast cancer cell xenograft tumor growth and microvessel density. Further studies showed that the HYAL1, HYAL2 and HA were elevated in breast cancer, and HYAL1 could downregulate HA expression. In conclusion, HYAL1 may be a potential prognostic marker and therapeutic target in breast cancer.Extracellular matrix (ECM) is closely correlated with tumor cell growth, proliferation, metastasis and angiogenesis, etc. Hyaluronic acid (HA) is a component of the ECM. It is a nonsulfated glycosaminoglycan made up of repeating disaccharide units, D-glucuronic acid and N-acetyl-D-glucosamine. HA keeps tissues hydrated and maintains osmotic balance and cartilage integrity.

We hypothesized that key signaling pathways of glioma genesis might enable the molecular classification of gliomas. Gene coexpression modules around epidermal growth factor receptor (EGFR) (EM, 29 genes) or platelet derived growth factor receptor A (PDGFRA) (PM, 40 genes) in gliomas were identified. Based on EM and PM expression signatures, nonnegative matrix factorization reproducibly clustered 1,369 adult diffuse gliomas WHO grades II-IV from four independent databases generated in three continents, into the subtypes (EM, PM and EM low PM low gliomas) in a morphology-independent manner. Besides their distinct patterns of genomic alterations, EM gliomas were associated with higher age at diagnosis, poorer prognosis, and stronger expression of neural stem cell and astrogenesis genes. Both PM and EM low PM low gliomas were associated with younger age at diagnosis and better prognosis. PM gliomas were enriched in the expression of oligodendrogenesis genes, whereas EM low PM low gliomas were enriched in the signatures of mature neurons and oligodendrocytes. The EM/PM-based molecular classification scheme is applicable to adult low-grade and high-grade diffuse gliomas, and outperforms existing classification schemes in assigning diffuse gliomas to subtypes with distinct transcriptomic and genomic profiles. The majority of the EM/PM classifiers, including regulators of glial fate decisions, have not been extensively studied in glioma biology. Subsets of these classifiers were coexpressed in mouse glial precursor cells, and frequently amplified or lost in an EM/PM glioma subtypespecific manner, resulting in somatic copy number alteration-dependent gene expression that contributes to EM/PM signatures in glioma samples. EM/PM-based molecular classification provides a molecular diagnostic framework to expedite the search for new glioma therapeutic targets.

Hydroxyl radical reacts readily with β-carotene following submicrosecond laser photolysis of N-hydroxypyridine-2(1H)-thione (N-HPT) as a "photo-Fenton" reagent generating hydroxyl and thiyl radicals in acetonitrile:tetrahydrofuran (4:1, v/v) solution. On the basis of spectral evidence, and supported by kinetic considerations and thermodynamic calculations, a short-lived transient species, detected by time-resolved absorption spectroscopy with an absorption maximum at ∼750 nm and a lifetime of ∼150 ns at 25 °C under anaerobic conditions, is suggested to be the long-sought neutral β-carotene radical formed by hydrogen-atom abstraction. The transient spectrum is different from the spectra of the β-carotene radical cation (∼1000 nm absorption maximum with a millisecond lifetime), the β-carotene radical adducts (∼520 nm, several microsecond lifetime), the β-carotene radical cation ion pair (∼750 nm, several hundred microsecond lifetime), and the β-carotene radical anion (∼880 nm, a few tens of microsecond lifetime). In parallel, β-carotene reacts with the thiyl radical to yield a sulfur radical adduct with absorption maximum at ∼520 nm with a lifetime of 3.0 μs. For astaxanthin and canthaxanthin, the reaction with the thiyl radical dominates and the neutral radical is hardly formed in agreement with the less reducing properties of these 4,4'-diketo carotenoids without the reactive 4,4'-hydrogens.

Our previous study showed that concomitant use of berberine (BBR) and fluconazole (FLC) provided a synergistic action against FLC-resistant Candida albicans (C. albicans) clinical strains in vitro. To clarify the mechanism underlying this action, we performed a comparative proteomic study in untreated control cells and cells treated with FLC and/or BBR in 2 clinical strains of C. albicans resistant to FLC. Our analyses identified 16 differentially expressed proteins, most of which were related to energy metabolisms (e.g., Gap1, Adh1, and Aco1). Functional analyses revealed that FLC + BBR treatment increased mitochondrial membrane potential, decreased intracellular ATP level, inhibited ATP-synthase activity, and increased generation of endogenous reactive oxygen species (ROS) in FLC-resistant strains. In addition, checkerboard microdilution assay showed that addition of antioxidant ascorbic acid or reduced glutathione reduced the synergistic antifungal activity of FLC + BBR significantly. These results suggest that mitochondrial aerobic respiration shift and endogenous ROS augmentation contribute to the synergistic action of FLC + BBR against FLC-resistant C. albicans.

f Human adenovirus (Ad) serotypes Ad3, Ad7, Ad11, and Ad14, as well as a recently emerged strain of Ad14 (Ad14p1), use the epithelial junction protein desmoglein 2 (DSG2) as a receptor for infection. Unlike Ad interaction with CAR and CD46, structural details for Ad binding to DSG2 are still elusive. Using an approach based on Escherichia coli expression libraries of random Ad3 and Ad14p1 fiber knob mutants, we identified amino acid residues that, when mutated individually, ablated or reduced Ad knob binding to DSG2. These residues formed three clusters inside one groove at the extreme distal end of the fiber knob. The Ad3 fiber knob mutant library was also used to identify variants with increased affinity to DSG2. We found a number of mutations within or near the EF loop of the Ad3 knob that resulted in affinities to DSG2 that were several orders of magnitude higher than those to the wild-type Ad3 knob. Crystal structure analysis of one of the mutants showed that the introduced mutations make the EF loop more flexible, which might facilitate the interaction with DSG2. We recently identified DSG2 as the main receptor for a group of species B adenoviruses, including adenovirus serotype 3 (Ad3), a serotype which is widely distributed in the human population (1). We found that the DSG2-interacting domain(s) within Ad3 is formed by several fiber knobs (2). This specific mode of Ad3 fiber knob-DSG2 interaction provides a high avidity and is functionally relevant for opening of epithelial junctions (1, 2). The latter involves clustering of DSG2 and activation of pathways that are reminiscent of an epithelial-to-mesenchymal transition, including the phosphorylation of mitogen-activated protein kinase (MAPK) and the downregulation of junction protein expression (1,3,4). The ability to open epithelial junctions appears to be important for Ad3 penetration into and spread within airway epithelial cells (1, 2, 4). In a recent study, we attempted to find the minimal moiety within the Ad3 capsid that confers efficient binding to DSG2 (2). We generated a small recombinant protein which contains the Ad3 fiber knob and a domain that allows for the self-dimerization of trimeric Ad3 fiber knobs (JO-1) (2). JO-1 can be readily produced in Escherichia coli and purified by affinity chromatography. In polarized epithelial cell cultures, JO-1 triggered the opening of intercellular junctions, while intravenous injection of JO-1 into mice with epithelial tumors allowed for better penetration of anti-cancer drugs (3, 5).The first goal of the present study was to further delineate structural features of the Ad3 fiber knob-DSG2 interaction. This included identifying the amino acid residues within the Ad3 fiber knob that are involved in binding to DSG2 and creating JO-1 mutants with reduced and ablated binding to DSG2. The second goal of this study, which has translational relevance, was to further improve JO-1 by enhancing its affinity to DSG2, thereby increasing its therapeutic effect. This was done by identifying mutants with increased b...

A new type of Cp*Ir complex bearing a functional 2,2'-bibenzimidazole ligand was designed, synthesized, and found to be a highly effective and general catalyst for the N-methylation of a variety of amines with methanol in the presence of a weak base (0.3 equiv of CsCO).

Aqueous solubility of calcium l-lactate, calcium d-gluconate, and calcium d-lactobionate increases with temperature (10-30 °C investigated), most significantly for the least soluble d-gluconate, while the calcium ion activity of the saturated solutions decreases with temperature, as measured electrochemically, most significantly for the most soluble d-lactobionate. This unusual behavior is discussed in relation to dairy processing and explained by endothermic binding of calcium to hydroxycarboxylate anions determined to have ΔH°ass = (31 ± 3) kJ·mol(-1) for l-lactate, (34 ± 2) kJ·mol(-1) for d-gluconate, and (29 ± 3) kJ·mol(-1) for d-lactobionate in 1:1 complexes with thermodynamic binding constants at 25 °C of Kass = 49 (l-lactate), 88 (d-gluconate), and 140 (d-lactobionate). Quantum mechanical calculations within density functional theory (DFT) confirm the ordering of strength of binding. The complex formation is entropy driven with ΔS°ass> 0, resulting in decreasing calcium ion activity in aqueous solutions for increasing temperature, even for the saturated solutions despite increasing solubility.