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We document, analyse, and interpret direct and rapid infiltration of precipitation to the southern margin of the Salar de Atacama halite‐hosted brine aquifer during two intense precipitation events in 2012–2013. We present physical, geochemical, and stable and radioactive isotope data to detail this influx of water. The two events differ distinctly in the mechanisms of recharge. The 2012 event did not produce direct precipitation onto the salar surface, while the 2013 event did. Both events are recorded by abrupt changes in head in observation wells along the halite aquifer margin. Spatially distributed water levels rose by over 30 cm during the larger 2013 event consistent with remotely sensed observations of surface water extent. The lithium concentration and stable isotopic composition of water indicate dilution of brine and dissolution of salt with fresh water. Tritium measurements of precipitation, surface water, and groundwater all indicate modern influx of water to the halite aquifer along the southern margin. We extend these observations by examining the response of the halite aquifer as a whole to precipitation events during the period of 2000–2010. This study suggests that local recharge to the aquifer during sporadic precipitation onto the halite nucleus is an important component of the modern water budget in this hyper‐arid environment. The rapid dissolution and salinization along the southern margin of the salar halite nucleus are aided by such precipitation events contributing a modern fresh water component to the water budget of the economically valuable lithium‐rich brine. Copyright © 2016 John Wiley & Sons, Ltd.

Focused groundwater discharge in closed basins provides opportunities to investigate mechanisms for closing hydrologic and solute budgets in arid regions. The Salar de Atacama (SdA), adjacent to the Central Andean Plateau in the hyperarid Atacama Desert, provides an extreme example of halite (>1800 km3) and lithium brine (~5000 ppm) accumulation spanning late Miocene to present. Minimum long‐term water discharge needed to sustain halite accumulation over this timescale at SdA is 9–20 times greater than modern recharge (and double wet‐climate paleorecharge) within the topographic watershed. Closing this imbalance requires sourcing water from recharge on the orogenic plateau in an area over 4 times larger than the topographic watershed. Prolonged water discharge at SdA requires long residence times, deep water tables in recharge zones coupled with persistent near‐surface water tables in discharge areas, and large contributing areas characterized by strong gradients in landscape and climate resulting from plateau uplift.

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