Biofuels from lignocellulosic feedstocks have the potential to improve a wide range of ecosystem services while simultaneously reducing dependence on fossil fuels. Here, we report on the six-year production potential (above ground net primary production, ANPP), post-frost harvested biomass (yield), and gross harvest efficiency (GHE=yield/ANPP) of seven model bioenergy cropping systems in both southcentral Wisconsin (ARL) and southwest Michigan (KBS). The cropping systems studied were continuous corn (Zea mays L.), switchgrass (Panicum virgatum L.), giant miscanthus (Miscanthus × giganteus Greef & Deuter ex Hodkinson & Renvoize), hybrid poplar (Populus nigra × P. maximowiczii A. Henry "NM6"), a native grass mixture (5 sown species), an early successional community, and a restored prairie (18 sown species). Overall the most productive cropping systems were corn > giant miscanthus > and switchgrass, which were significantly more productive than native grasses ≈ restored prairie ≈ early successional ≈ and hybrid poplar, although some systems (e.g. hybrid poplar) differed significantly by location. Highest total ANPP was observed in giant miscanthus (35.2±2.0 Mg ha-1 yr-1) at KBS during the sixth growing season. Six-year cumulative biomass yield from hybrid poplar at KBS (55.4±1.3 Mg ha-1) was high but significantly lower than corn and giant miscanthus (65.5±1.5, 65.2±5.5 Mg ha-1 , respectively). Hypothesized yield advantages of diversity in perennial cropping systems were not observed during this period. Harvested biomass yields were 60, 56, and 44% of ANPP for corn, perennial grass, and restored prairie, respectively, suggesting that relatively simple changes in agronomic management (e.g. harvest timing and harvest equipment modification) may provide significant gains in bioenergy crop yields. Species composition was an important determinant of GHE in more diverse systems. 3 Results show that well-established, dedicated bioenergy crops are capable of producing as much biomass as corn stover, but with fewer inputs.

Measurement of greenhouse gas (GHG) fluxes between the soil and the atmosphere, in both managed and unmanaged ecosystems, is critical to understanding the biogeochemical drivers of climate change and to the development and evaluation of GHG mitigation strategies based on modulation of landscape management practices. The static chamber-based method described here is based on trapping gases emitted from the soil surface within a chamber and collecting samples from the chamber headspace at regular intervals for analysis by gas chromatography. Change in gas concentration over time is used to calculate flux. This method can be utilized to measure landscape-based flux of carbon dioxide, nitrous oxide, and methane, and to estimate differences between treatments or explore system dynamics over seasons or years. Infrastructure requirements are modest, but a comprehensive experimental design is essential. This method is easily deployed in the field, conforms to established guidelines, and produces data suitable to large-scale GHG emissions studies.

BackgroundInterannual variability in precipitation, particularly drought, can affect lignocellulosic crop biomass yields and composition, and is expected to increase biofuel yield variability. However, the effect of precipitation on downstream fermentation processes has never been directly characterized. In order to investigate the impact of interannual climate variability on biofuel production, corn stover and switchgrass were collected during 3 years with significantly different precipitation profiles, representing a major drought year (2012) and 2 years with average precipitation for the entire season (2010 and 2013). All feedstocks were AFEX (ammonia fiber expansion)-pretreated, enzymatically hydrolyzed, and the hydrolysates separately fermented using xylose-utilizing strains of Saccharomyces cerevisiae and Zymomonas mobilis. A chemical genomics approach was also used to evaluate the growth of yeast mutants in the hydrolysates.ResultsWhile most corn stover and switchgrass hydrolysates were readily fermented, growth of S. cerevisiae was completely inhibited in hydrolysate generated from drought-stressed switchgrass. Based on chemical genomics analysis, yeast strains deficient in genes related to protein trafficking within the cell were significantly more resistant to the drought-year switchgrass hydrolysate. Detailed biomass and hydrolysate characterization revealed that switchgrass accumulated greater concentrations of soluble sugars in response to the drought and these sugars were subsequently degraded to pyrazines and imidazoles during ammonia-based pretreatment. When added ex situ to normal switchgrass hydrolysate, imidazoles and pyrazines caused anaerobic growth inhibition of S. cerevisiae.ConclusionsIn response to the osmotic pressures experienced during drought stress, plants accumulate soluble sugars that are susceptible to degradation during chemical pretreatments. For ammonia-based pretreatment, these sugars degrade to imidazoles and pyrazines. These compounds contribute to S. cerevisiae growth inhibition in drought-year switchgrass hydrolysate. This work discovered that variation in environmental conditions during the growth of bioenergy crops could have significant detrimental effects on fermentation organisms during biofuel production. These findings are relevant to regions where climate change is predicted to cause an increased incidence of drought and to marginal lands with poor water-holding capacity, where fluctuations in soil moisture may trigger frequent drought stress response in lignocellulosic feedstocks.Electronic supplementary materialThe online version of this article (doi:10.1186/s13068-016-0657-0) contains supplementary material, which is available to authorized users.

BackgroundMicrobial conversion of lignocellulosic feedstocks into biofuels remains an attractive means to produce sustainable energy. It is essential to produce lignocellulosic hydrolysates in a consistent manner in order to study microbial performance in different feedstock hydrolysates. Because of the potential to introduce microbial contamination from the untreated biomass or at various points during the process, it can be difficult to control sterility during hydrolysate production. In this study, we compared hydrolysates produced from AFEX-pretreated corn stover and switchgrass using two different methods to control contamination: either by autoclaving the pretreated feedstocks prior to enzymatic hydrolysis, or by introducing antibiotics during the hydrolysis of non-autoclaved feedstocks. We then performed extensive chemical analysis, chemical genomics, and comparative fermentations to evaluate any differences between these two different methods used for producing corn stover and switchgrass hydrolysates.ResultsAutoclaving the pretreated feedstocks could eliminate the contamination for a variety of feedstocks, whereas the antibiotic gentamicin was unable to control contamination consistently during hydrolysis. Compared to the addition of gentamicin, autoclaving of biomass before hydrolysis had a minimal effect on mineral concentrations, and showed no significant effect on the two major sugars (glucose and xylose) found in these hydrolysates. However, autoclaving elevated the concentration of some furanic and phenolic compounds. Chemical genomics analyses using Saccharomyces cerevisiae strains indicated a high correlation between the AFEX-pretreated hydrolysates produced using these two methods within the same feedstock, indicating minimal differences between the autoclaving and antibiotic methods. Comparative fermentations with S. cerevisiae and Zymomonas mobilis also showed that autoclaving the AFEX-pretreated feedstocks had no significant effects on microbial performance in these hydrolysates.ConclusionsOur results showed that autoclaving the pretreated feedstocks offered advantages over the addition of antibiotics for hydrolysate production. The autoclaving method produced a more consistent quality of hydrolysate, and also showed negligible effects on microbial performance. Although the levels of some of the lignocellulose degradation inhibitors were elevated by autoclaving the feedstocks prior to enzymatic hydrolysis, no significant effects on cell growth, sugar utilization, or ethanol production were seen during bacterial or yeast fermentations in hydrolysates produced using the two different methods.Electronic supplementary materialThe online version of this article (doi:10.1186/s13068-015-0356-2) contains supplementary material, which is available to authorized users.

Greenhouse gas (GHG) emissions from soils are a key sustainability metric of cropping systems. During crop establishment, disruptive land-use change is known to be a critical, but under reported period, for determining GHG emissions. We measured soil N 2 O emissions and potential environmental drivers of these fluxes from a three-year establishment-phase bioenergy cropping systems experiment replicated in southcentral Wisconsin (ARL) and southwestern Michigan (KBS). Cropping systems treatments were annual monocultures (continuous corn, corn-soybean-canola rotation), perennial monocultures (switchgrass, miscanthus, and poplar), and perennial polycultures (native grass mixture, early successional community, and restored prairie) all grown using best management practices specific to the system. Cumulative three-year N 2 O emissions from annuals were 142% higher than from perennials, with fertilized perennials 190% higher than unfertilized perennials. Emissions ranged from 3.1 to 19.1 kg N 2 O-N ha À1 yr À1 for the annuals with continuous corn > corn-soybean-canola rotation and 1.1 to 6.3 kg N 2 O-N ha À1 yr À1 for perennials. Nitrous oxide peak fluxes typically were associated with precipitation events that closely followed fertilization. Bayesian modeling of N 2 O fluxes based on measured environmental factors explained 33% of variability across all systems. Models trained on single systems performed well in most monocultures (e.g., R 2 = 0.52 for poplar) but notably worse in polycultures (e.g., R 2 = 0.17 for early successional, R 2 = 0.06 for restored prairie), indicating that simulation models that include N 2 O emissions should be parameterized specific to particular plant communities. Our results indicate that perennial bioenergy crops in their establishment phase emit less N 2 O than annual crops, especially when not fertilized. These findings should be considered further alongside yield and other metrics contributing to important ecosystem services.

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Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N2O) emissions and nitrate (NO3-) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18-species restored prairie responded to annual fertilizer applications of 56 kg N ha-1 in a field-scale agronomic trial in south-central Wisconsin over a 2-year period. We observed greater fertilizer-induced N2O emissions and sub-rooting zone NO3- concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. Our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization.

Management‐intensive rotational grazing is used by many farmers seeking to balance profitability, environmental stewardship, and quality of life. Productivity of pastures in much of the upper Midwest is limited to April through October, so promoting high quality forage production during the grazing season and for winter storage is critical to dairy and beef farm profitability. We conducted an experiment on pastures dominated by Kentucky bluegrass (Poa pratensis L.), orchardgrass (Dactylis glomerata L.), meadow fescue [Schedonorus pratensis (Huds.) P. Beauv.], perennial ryegrass (Lolium perenne L.), and white clover (Trifolium repens L.) to compare forage production, forage quality, and root production under management‐intensive rotational grazing, continuous grazing, haymaking, and land with no agronomic management. Rotational paddocks were grazed by cow‐calf pairs monthly for ∼2 d and then allowed to rest for ∼28 d. Plots designated for haymaking were harvested two times per growing season. Potential utilizable forage, quantified by incorporating the estimates of refused and nonutilized biomass, and relative forage quality were significantly greater under management‐intensive rotational grazing when compared to the other treatments. Root production in the surface 15 cm was significantly lower under both grazing treatments compared to the undefoliated control site. The perception of improved production has been used to advocate for rotationally grazed over continuously grazed systems in subhumid pasture, but experimental results have been equivocal. Our results point to managed grazing as a viable alternative to continuous grazing and haymaking in terms of both forage production and quality but not root production.