Ecological and genetic studies of marine turtles generally support the hypothesis of natal homing, but leave open the question of the geographical scale of genetic exchange and the capacity of turtles to shift breeding sites. Here we combine analyses of mitochondrial DNA (mtDNA) variation and recapture data to assess the geographical scale of individual breeding populations and the distribution of such populations through Australasia. We conducted multiscale assessments of mtDNA variation among 714 samples from 27 green turtle rookeries and of adult female dispersal among nesting sites in eastern Australia. Many of these rookeries are on shelves that were flooded by rising sea levels less than 10 000 years (c. 450 generations) ago. Analyses of sequence variation among the mtDNA control region revealed 25 haplotypes, and their frequency distributions indicated 17 genetically distinct breeding stocks (Management Units) consisting either of individual rookeries or groups of rookeries in general that are separated by more than 500 km. The population structure inferred from mtDNA was consistent with the scale of movements observed in long-term mark-recapture studies of east Australian rookeries. Phylogenetic analysis of the haplotypes revealed five clades with significant partitioning of sequence diversity (Phi = 68.4) between Pacific Ocean and Southeast Asian/Indian Ocean rookeries. Isolation by distance was indicated for rookeries separated by up to 2000 km but explained only 12% of the genetic structure. The emerging general picture is one of dynamic population structure influenced by the capacity of females to relocate among proximal breeding sites, although this may be conditional on large population sizes as existed historically across this region.

In Australia, the olive ridley sea turtle Lepidochelys olivacea has received little research attention and monitoring. The Australian populations are relatively small and their distribution is limited to remote areas in the northern part of the country. Previous global genetic studies of olive ridley populations showed that the Australian breeding population at the McCluer Group of islands, Northern Territory, is genetically distinct from other olive ridley populations breeding in the Indo-Pacific. However, nothing is known about the genetic stock structure among Australian olive ridley rookeries found across northern Australia. High predation of eggs by feral pigs, dogs and monitor lizards Varanus spp. is believed to have severely impacted the number of nesting females at some rookeries. Of particular concern is the small nesting population on the western Cape York Peninsula, and without immediate conservation action this population could face extinction. The results presented here establish that there are at least 2 independent management units (stocks) of olive ridley turtles nesting in Australia and emphasise the importance of conserving the genetically distinct small breeding population nesting along the western Cape York Peninsula. In addition, results from 44 turtles caught in ghost nets across the Gulf of Carpentaria revealed that 45% of the haplotypes (32% of all ghost net samples) had not been observed at any rookery in Australia or SE Asia. This research highlights the need for better information on olive ridley population structure in the region and for urgent conservation action for the western Cape York population.

Coastal seagrass habitats in tropical and subtropical regions support aggregations of resident green turtles (Chelonia mydas) from several genetically distinct breeding populations. Migration of individuals to their respective dispersed breeding sites provides a complex pattern of migratory connectivity among nesting and feeding habitats of this species. An understanding of this pattern is important in regions where the persistence of populations is under threat from anthropogenic impacts. The present study uses mitochondrial DNA and mixed-stock analyses to assess the connectivity among seven feeding grounds across the north Australian coast and adjacent areas and 17 genetically distinct breeding populations from the Indo-Pacific region. It was hypothesised that large and geographically proximate breeding populations would dominate at nearby feeding grounds. As expected, each sampled feeding area appears to support multiple breeding populations, with two aggregations dominated by a local breeding population. Geographic distance between breeding and feeding habitat strongly influenced whether a breeding population contributed to a feeding ground (wi = 0.654); however, neither distance nor size of a breeding population was a good predictor of the extent of their contribution. The differential proportional contributions suggest the impact of anthropogenic mortality at feeding grounds should be assessed on a case-by-case basis.

Species' response to climate change is already occurring and managers require scenario planning with tangible actions for effective conservation. We address this need by examining the impact of projected changes in maximum temperature and sea level rise (SLR), on the future suitability of current nesting sites for two globally endangered turtle species (Eretmochelys imbricata, hawksbill and Caretta caretta, loggerhead turtles). We parameterized the biophysical characteristics of nesting beaches in Western Australia (WA), Northern Territory (NT) and Queensland (Qld) and used climate change projections to assess future suitability. All current nesting beaches are predicted to experience increased maximum temperatures (up to 34.8°C in NT and 38.9°C in WA), sex ratios will become increasingly female-skewed, and embryo viability will be threatened at beaches in the north and west of Australia. Beaches in eastern Australia are less likely to flood than those in the west under sea level rise, although all beaches will experience increased flooding, with some sites projected to be below mean high water level by 2100. Many current beaches globally may become unsuitable for nesting under climate change and therefore other existing, or newly established, beaches will be critical for the persistence of turtle populations: thermally suitable climate space will undergo a southwards shift. This type of analysis can be repeated elsewhere to inform regional long-term conservation planning, such as implementation of protected areas. We demonstrate a valid approach to addressing the issue of conservation for species that use different habitats at different life stages in different parts of the world: by assessing future habitat suitability we highlight important areas for effective conservation planning and management.

In parts of the Indo-Pacific, large-scale exploitation of the green turtle Chelonia mydas continues to pose a serious threat to the persistence of this species; yet very few studies have assessed the pattern and extent of the impact of such harvests. We used demographic and genetic data in an age-based model to investigate the viability of an exploited green turtle stock from Aru, south-east Indonesia. We found that populations are decreasing under current exploitation pressures. The effects of increasingly severe exploitation activities at foraging and nesting habitat varied depending on the migratory patterns of the stock. Our model predicted a rapid decline of the Aru stock in Indonesia under local exploitation pressure and a shift in the genetic composition of the stock. We used the model to investigate the influence of different types of conservation actions on the persistence of the Aru stock. The results show that local management actions such as nest protection and reducing harvests of adult nesting and foraging turtles can have considerable conservation outcomes and result in the long-term persistence of genetically distinct management units.

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Whilst the demand for nutritious and sustainable seafood is increasing, fishing yields are declining due to overfishing and climate change. The inshore aquaculture of marine molluscs—e.g., the suspension-feeding cockle Cerastoderma edule for NW Europe—might be an alternative practice if cost-effective and nature-based technology enhances growth and survival. Our inshore experiments revealed that increasing the seawater residence time resulted in improved water quality. The reduction in sediment loads and stimulation of pelagic microalgal growth resulted in enhanced shell growth and meat content of the wild cockles seeded into the system. Shorter residence times resulted also in an increase in benthic microalgae, but the concurrent increase in silt content of the sediment appeared to hamper effective filtration by cockles. The growth conditions (with respect to the water and sediment quality) for the inshore cultivation of cockles can indeed be improved by means of ecological engineering, suggesting that the inshore aquaculture of marine shellfish can provide sustainable food and income for coastal communities, in particular when the shellfish farms are located in low-lying salinized coastal areas where common agriculture practices are no longer profitable. The involvement of the shellfishery industry was and will be crucial for studying and understanding the complex practice of cockle cultivation.