Little is known about the genetics of nonsyndromic intellectual disability (NSID). We hypothesized that de novo mutations (DNMs) in synaptic genes explain an important fraction of sporadic NSID cases. In order to investigate this possibility, we sequenced 197 genes encoding glutamate receptors and a large subset of their known interacting proteins in 95 sporadic cases of NSID. We found 11 DNMs, including ten potentially deleterious mutations (three nonsense, two splicing, one frameshift, four missense) and one neutral mutation (silent) in eight different genes. Calculation of point-substitution DNM rates per functional and neutral site showed significant excess of functional DNMs compared to neutral ones. De novo truncating and/or splicing mutations in SYNGAP1, STXBP1, and SHANK3 were found in six patients and are likely to be pathogenic. De novo missense mutations were found in KIF1A, GRIN1, CACNG2, and EPB41L1. Functional studies showed that all these missense mutations affect protein function in cell culture systems, suggesting that they may be pathogenic. Sequencing these four genes in 50 additional sporadic cases of NSID identified a second DNM in GRIN1 (c.1679_1681dup/p.Ser560dup). This mutation also affects protein function, consistent with structural predictions. None of these mutations or any other DNMs were identified in these genes in 285 healthy controls. This study highlights the importance of the glutamate receptor complexes in NSID and further supports the role of DNMs in this disorder.

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The polyamine content of cells is regulated by biosynthesis, degradation and transport. In Escherichia coli, the genes for three different polyamine transport systems have been cloned and characterized. Two uptake systems (putrescine-specific and spermidine-preferential) were ABC transporters, each consisting of a periplasmic substrate-binding protein, two transmembrane proteins and a membrane-associated ATPase. The crystal structures of the substrate-binding proteins (PotD and PotF) have been solved. They consist of two domains with an alternating beta-alpha-beta topology, similar to other periplasmic binding proteins. The polyamine-binding site is in a cleft between the two domains, as determined by crystallography and site-directed mutagenesis. Polyamines are mainly recognized by aspartic acid and glutamic acid residues, which interact with the NH(2)- (or NH-) groups, and by tryptophan and tyrosine residues that have hydrophobic interactions with the methylene groups of polyamines. The precursor of one of the substrate binding proteins, PotD, negatively regulates transcription of the operon for the spermidine-preferential uptake system, thus providing another level of regulation of cellular polyamines. The third transport system, catalysed by PotE, mediates both uptake and excretion of putrescine. Uptake of putrescine is dependent on membrane potential, whereas excretion involves an exchange reaction between putrescine and ornithine. In Saccharomyces cerevisiae, the gene for a polyamine transport protein (TPO1) was identified. The properties of this protein are similar to those of PotE, and TPO1 is located on the vacuolar membrane.

In Figure 2B, the label on the right should be NR1-S560dup/NR2B instead of the alternative terminology NR1 (S560_T561InsS)/NR2B.

The tonoplast K ؉ membrane transport system plays a crucial role in maintaining K ؉ homeostasis in plant cells. Here, we isolated cDNAs encoding a two-pore K ؉ channel (NtTPK1) from Nicotiana tabacum cv. SR1 and cultured BY-2 tobacco cells. Two of the four variants of NtTPK1 contained VHG and GHG instead of the GYG signature sequence in the second pore region. All four products were functional when expressed in the Escherichia coli cell membrane, and NtTPK1 was targeted to the tonoplast in tobacco cells. Two of the three promoter sequences isolated from N. tabacum cv. SR1 were active, and expression from these was increased ϳ2-fold by salt stress or high osmotic shock. To determine the properties of NtTPK1, we enlarged mutant yeast cells with inactivated endogenous tonoplast channels and prepared tonoplasts suitable for patch clamp recording allowing the NtTPK1-related channel conductance to be distinguished from the small endogenous currents. NtTPK1 exhibited strong selectivity for K ؉ over Na ؉ . NtTPK1 activity was sensitive to spermidine and spermine, which were shown to be present in tobacco cells. NtTPK1 was active in the absence of Ca 2؉ , but a cytosolic concentration of 45 M Ca 2؉ resulted in a 2-fold increase in the amplitude of the K ؉ current. Acidification of the cytosol to pH 5.5 also markedly increased NtTPK1-mediated K ؉ currents. These results show that NtTPK1 is a novel tonoplast K ؉ channel belonging to a different group from the previously characterized vacuolar channels SV, FV, and VK.Plants take up potassium (K ϩ ) from the soil and plant cells accumulate K ϩ to regulate the membrane potential and turgor pressure. The cytoplasmic K ϩ concentration is tightly controlled at ϳ100 mM (1). Vacuoles are major subcellular reservoirs for controlling K ϩ homeostasis in plant cells (1). During cell expansion, for instance during stomata opening or cell growth, tonoplast transport system moves K ϩ into the vacuole, whereas, under conditions of salinity stress, K ϩ is replaced by Na ϩ (2-5).Several kinds of genes encoding K ϩ channels and K ϩ transporters have been identified in the Arabidopsis thaliana genome, and their function and tissue and cellular distribution have been extensively studied. They consist of two families, the Shaker-type channels, with six hydrophobic transmembrane domains and a single pore domain, and the two-pore K ϩ channel (TPK) 2 family, with four transmembrane and two pore domains. Six different genes encoding TPK-type channels are present in A. thaliana. AtTPK4 is targeted to the plasma membrane (6), while the other five, AtTPK1, AtTPK2, AtTPK3, AtTPK5, and AtKCO3, are localized in the vacuolar membrane (7). AtTPK1 and AtTPK4 have been functionally characterized. AtTPK4 shows a voltage-independent K ϩ profile in Xenopus laevis ooctyes and in yeast, and the K ϩ current is inhibited by extracellular Ca 2ϩ and reduced by shifting the cytosolic pH from 7.5 to 6.3, but is not affected by the external pH (6). AtTPK1 has different properties to AtTPK4 (7,8). In the yeast and plant ...

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