In the present study, a genetic analysis of nuclear microsatellites was conducted in Abies cilicica populations growing in West Taurus, East Taurus, and Lebanon mountains to obtain evidence for significant genetic differentiation. Despite range fragmentation, all examined populations tended to maintain a relatively high level of genetic diversity (H E = 0.724) and showed moderate genetic differentiation (F ST = 0.134) that is frequently noted in Mediterranean tree species. However, significant inbreeding, bottleneck effect, and low effective population sizes were detected, that may negatively affect species genetic resources. Bayesian clustering revealed three distinct groups, "West Taurus", "East Taurus," and "Lebanon", which reflect geographic structure of the species natural range. Minor genetic admixture between Lebanese and East Taurus populations of A. cilicica was found, but no genetic admixture between Lebanese populations and West Taurus. We argue that significant genetic differentiation discovered among areas of species occurrence is probably due to the effect of long-lasting genetic isolation that started in that region along with the Pleistocene climatic alternation and was further enhanced with human-induced deforestations.

Despite Juniperus spp. being an important component of Mediterranean arid and semi‐arid ecosystems, there is a lack of complex studies on their biogeographical patterns. Using 16 morphological cone and seed traits and three nuclear microsatellite markers, we investigated the morphological and genetic variability of seven Mediterranean and Macaronesian Juniperus taxa (J. oxycedrus ssp. oxycedrus, J. oxycedrus ssp. badia, J. brevifolia, J. cedrus, J. deltoides, J. macrocarpa and J. navicularis) to identify biogeographical trends and interspecific genetic relationships. The highest gene diversity was measured in J. oxycedrus ssp. oxycedrus (HE = 0.716) and the lowest in J. brevifolia (HE = 0.441). The west Mediterranean was characterized by a higher level of genetic diversity than the east Mediterranean. A lack of significant genetic differences between European and African populations of J. oxycedrus suggests that the Strait of Gibraltar was not a significant barrier to gene flow, but has promoted some morphological differentiation. The genetic and morphological results strongly support the recognition of J. macrocarpa, J. navicularis and J. deltoides at the species rank, whereas J. oxycedrus ssp. badia should be included in J. oxycedrus. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 174, 637–653.

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Several Abies species are currently present in the Mediterranean Region and most of them are endemits and Tertiary relicts. Using six nuclear microsatellites, we studied the genetic structure and inter-specific relationships among West Mediterranean firs, A. pinsapo (Spain), A. maroccana and A. tazaotana (Morocco). Based on the hypothesis that A. pinsapo could historically exchange genes with A. alba growing in the Pyrenees via secondary contact, we investigated the level of genetic admixture between these species using a Bayesian approach.The studied populations showed moderate genetic diversity (mean H E = 0.598) and a high level of genetic differentiation (F ST = 0.225) that was especially pronounced between A. alba and African firs. All populations experienced a strong bottleneck effect that was likely induced by climatic changes occurring in the west Mediterranean during the last glacial cycle and the Holocene. According to Bayesian clustering, both African taxa grouped together in a single cluster, the two A. pinsapo populations formed a second cluster, and two additional clusters were detected within A. alba. Our results indicate that A. tazaotana is genetically very close to A. maroccana, and hence these two taxa should probably not be considered as separate species. We found no genetic admixture between A. pinsapo and A. alba and only minor between A. pinsapo and African fir populations suggesting an isolation effect of the Gibraltar Strait. Current limited distributions of firs in the Mediterranean Region together with changing climate may lead to further deterioration of the genetic diversity levels. Hence, future efforts should focus on monitoring the demography and genetic threats to existing populations.

Juniperus thurifera is a key element of the forest communities in arid and semi-arid areas of the western Mediterranean. Previous genetic and morphological investigations suggested that Algerian populations are genetically more similar to European than to Moroccan populations and advocated their recognition at the variety rank. We aimed to investigate the spatial genetic structure in J. thurifera to verify the distinct character of the Algerian population in terms of the genetic breaks reported among several North African taxa. We also modelled species distributions since the Eemian to recognise the impact of past climatic changes on the current pattern of diversity and predict possible changes in species distribution in the future. Species-specific microsatellites were used in the analysis of 11 populations from Algeria, Morocco and Europe. We revealed the significant genetic distinctiveness of the Algerian populations from the Moroccan and European stands that may have important taxonomic and conservation implications. The diversity pattern revealed for J. thurifera reflects the east-west genetic splits reported among some North African plant and animal taxa and suggests an impact of shared historical processes. Additionally, modelling of the distribution allowed us to identify possible glacial refugia and their impact on the modern pattern of differentiation in J. thurifera. Reduction of species occurrence, especially in the European domain, is likely according to the future projections of the species distribution.

Due to global climate cooling and aridification since the Paleogene, the members of the Neogene flora were extirpated from the Northern Hemisphere or were confined to a few refugial areas. For some species, the final reduction/extinction came in the Pleistocene, but some others have survived climatic transformations up to the present. This has occurred in Castanea sativa, a species of high commercial value in Europe and a significant component of the Caucasian forest biodiversity. In contrast to the European range, neither the historical biogeography nor the population genetic structure of the species in the isolated Caucasian range has been clarified. Here, based on a survey of 21 natural populations from the Caucasus and a single one from Europe, we provide likely biogeographic reconstruction and genetic diversity details. By applying Bayesian inference, species distribution modelling, and fossil pollen data, we estimated (1) the time of the Caucasian - European divergence during the Middle Pleistocene (436.5 ka), (2) the time of divergence among Caucasian lineages, and (3) outlined the glacial refugia for species. The climate changes related to the Early Middle Pleistocene Transition and the alpine orogenic uplift in the region are proposed as the major drivers of the intraspecific divergence and European-Caucasian disjunction, while the impact of the last glacial cycle was of marginal importance.

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