The purpose of this study was to perform an analysis of Streptococcus suis human invasive isolates, collected in Poland by the National Reference Centre for Bacterial Meningitis. Isolates obtained from 21 patients during 2000–2013 were investigated by phenotypic tests, multilocus sequence typing (MLST), analysis of the TR9 locus from the multilocus variable number tandem repeat (VNTR) analysis (MLVA) scheme and pulsed-field gel electrophoresis (PFGE) of SmaI-digested DNA. Determinants of virulence and antimicrobial resistance were detected by polymerase chain reaction (PCR) and analysed by sequencing. All isolates represented sequence type 1 (ST1) and were suggested to be serotype 2. PFGE and analysis of the TR9 locus allowed the discrimination of four and 17 types, respectively. Most of the isolates were haemolysis- and DNase-positive, and around half of them formed biofilm. Genes encoding suilysin, extracellular protein factor, fibronectin-binding protein, muramidase-released protein, surface antigen one, enolase, serum opacity factor and pili were ubiquitous in the studied group, while none of the isolates carried sequences characteristic for the 89K pathogenicity island. All isolates were susceptible to penicillin, cefotaxime, imipenem, moxifloxacin, chloramphenicol, rifampicin, gentamicin, linezolid, vancomycin and daptomycin. Five isolates (24 %) were concomitantly non-susceptible to erythromycin, clindamycin and tetracycline, and harboured the tet(O) and erm(B) genes; for one isolate, lsa(E) and lnu(B) were additionally detected. Streptococcus suis isolated in Poland from human invasive infections belongs to a globally distributed clonal complex of this pathogen, enriched in virulence markers. This is the first report of the lsa(E) and lnu(B) resistance genes in S. suis.Electronic supplementary materialThe online version of this article (doi:10.1007/s10096-016-2616-x) contains supplementary material, which is available to authorized users.

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Microbiome constitutes an important axis of individual variation that, together with genes and the environment, influences an individual's physiology and fitness. Microbiomes are dependent not only on an individual's body condition but also on external factors, such as diet or stress levels, and as such can be involved into feedbacks between the external ecological factors and internal physiology. In our study, we used a wild population of blue tits Cyanistes caeruleus to investigate the impact of external habitat composition on the microbiome of adult birds. We hypothesized that -through differences in plant composition, potentially affecting diet complexity -habitat type may impact the diversity and structure of the gut microbiome. Blue tits breeding in dense deciduous forests tended to have more diverse microbiomes and be significantly different in terms of microbiome composition from birds breeding in open, sparsely forested hay meadows. Distinct study plots also tended to differ in a number of parameters describing microbiome diversity. We observed no microbiome differentiation according to individual characteristics such as sex or age. The study emphasizes that external environment is one of the important modulators of microbiome diversity and calls for more such studies in wild animal populations.

Hypotheses postulating parasite‐mediated mate choice intrinsically assume that parasitic infections deteriorate the quality of male ornamentation. Although this assumption has often been studied in the context of carotenoid‐based colouration, only few studies investigated this with reference to structural feather colouration, which in many species plays a vital role in sexual selection. Here, using a three‐years dataset from a wild blue tit Cyanistes caeruleus population, we examined the relationship between the haemosporidian infection status and the structural as well as the carotenoid‐based colouration of adult birds. Furthermore, we investigated potential differences in the impact on feather colouration between two examined parasite genera: Plasmodium and Haemoproteus. For analysis of the feathers spectral reflectance we used both the tristimulus model and the avian tetrahedral colour space model, incorporating visual phenotype of the blue tit. Contrary to expectations we found that infected birds showed higher brightness, in both the structural and the carotenoid‐based colours. We also found no differences in the feather colouration between birds infected with Plasmodium and Haemoproteus. Observed pattern might be best explained by the parasite‐mediated selection hypothesis, as only individuals of superior quality should be able to survive the acute stage of infection and therefore they could produce more elaborate ornamental colouration.

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The costs associated with the production and maintenance of colour patches is thought to maintain their honesty. Although considerable research on sexual selection has focused on structurally coloured plumage ornaments, the proximate mechanisms of their potential condition dependence, and thus their honesty, is rarely addressed, particularly in an experimental context. Blue tit (Cyanistes caeruleus) nestlings have ultraviolet (UV)–blue structurally coloured tail feathers, providing a unique opportunity for investigation of the causes of variation in their colour. Here, we examined the influence of early growing conditions on the reflectance and structural properties of UV–blue-coloured tail feathers of blue tit nestlings. We applied a two-stage brood size manipulation to determine which stage of development more strongly impacts the quality of tail feather colouration and microstructure. We used small-angle X-ray scattering (SAXS) and electron microscopy to characterise the nanoscale and microscale structure of tail feather barbs. Nestlings from the broods enlarged at a later stage of growth showed a sex-specific rectrix development delay, with males being more sensitive to this manipulation. Contrary to predictions, treatment affected neither the quality of the barbs’ nanostructures nor the brightness and UV chroma of feathers. However, at the microscale, barbs’ keratin characteristics were impaired in late-enlarged broods. Our results suggest that nanostructure quality, which determines the UV–blue colour in tail feathers, is not sensitive to early rearing conditions. Furthermore, availability of resources during feather growth seems to impact the quality of feather microstructure more than body condition, which is likely to be determined at an earlier stage of nestling growth.

Carotenoid‐based coloration occurs predominantly in adult birds, yet in some species from the family Paridae, this trait is also present at the nestling stage. One of the factors proposed to affect the expression of this trait in immature birds is hatching date. Here, using the avian tetrahedral colour space model, we examined the influence of hatching date on the breast carotenoid‐based plumage coloration of the Blue Tit Cyanistes caeruleus nestlings. Because Blue Tits are sexually dichromatic, we also investigated the potential interaction between hatching date and sex that could arise from differences in condition dependence of this trait between males and females. We found a positive relationship between UV chroma of breast feathers and hatching date. The amount of UV reflectance is thought to be negatively related to carotenoid content in feathers. The observed increase of UV chroma through the breeding season might therefore be caused by a seasonal decline in the availability and quality of Lepidoptera larvae – the main source of carotenoids in food of the Tits. We also observed a sex difference in the relationship between brightness of breast feathers (achromatic, structural component) and hatching date, which in males was negative and in females not significant. Our study provides further evidence that the timing of breeding is related to the expression of nestling carotenoid‐based coloration, a potentially meaningful element of offspring–parent communication, and suggests a sex‐specific effect of hatching date on its structural component.

Most of our knowledge on hole-nesting birds, including plumage colouration (an important component of visual signalling), comes from studies on populations breeding in human-provided nestboxes. However, as demonstrated in comparative studies, multiple parameters, such as cavity dimensions and microclimatic conditions, differ between natural and artificial cavities. Despite this, no study so far examined the impact of cavity type on plumage colouration to verify whether extrapolation of results from birds growing in nestboxes is justified. Here, we examined the impact of cavity type - natural cavities vs. nestboxes - on the carotenoid-based colouration of blue tit (Cyanistes caeruleus) and great tit (Parus major) nestlings. We found clear differences in plumage colouration depending on the type of cavity in which the birds developed. Our study adds to the growing body of evidence confirming that varying properties of natural cavities and nestboxes might influence nestling physiology, leading to phenotypic differences in the long-term.