Fungi are highly diverse organisms, which provide multiple ecosystem services.However, compared with charismatic animals and plants, the distribution patterns and conservation needs of fungi have been little explored. Here, we examined endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. We found that the endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka, and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are predominantly vulnerable to drought, heat and land-cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests, and woodlands. We stress that more attention should be focused on the conservation of fungi, especially root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi in tropical regions as well as unicellular early-diverging groups and macrofungi in general. Given the low overlap between the endemicity of fungi and macroorganisms, but high conservation needs in both groups, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms.

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

Fungi play pivotal roles in ecosystem functioning, but little is known about their global patterns of diversity, endemicity, vulnerability to global change drivers and conservation priority areas. We applied the high-resolution PacBio sequencing technique to identify fungi based on a long DNA marker that revealed a high proportion of hitherto unknown fungal taxa. We used a Global Soil Mycobiome consortium dataset to test relative performance of various sequencing depth standardization methods (calculation of residuals, exclusion of singletons, traditional and SRS rarefaction, use of Shannon index of diversity) to find optimal protocols for statistical analyses. Altogether, we used six global surveys to infer these patterns for soil-inhabiting fungi and their functional groups. We found that residuals of log-transformed richness (including singletons) against log-transformed sequencing depth yields significantly better model estimates compared with most other standardization methods. With respect to global patterns, fungal functional groups differed in the patterns of diversity, endemicity and vulnerability to main global change predictors. Unlike α-diversity, endemicity and global-change vulnerability of fungi and most functional groups were greatest in the tropics. Fungi are vulnerable mostly to drought, heat, and land cover change. Fungal conservation areas of highest priority include wetlands and moist tropical ecosystems.

Forests and woodlands in the West African Guineo-Sudanian transition zone contain many tree species that form symbiotic interactions with ectomycorrhizal (ECM) fungi. These fungi facilitate plant growth by increasing nutrient and water uptake and include many fruiting body-forming fungi, including some edible mushrooms. Despite their importance for ecosystem functioning and anthropogenic use, diversity and distribution of ECM fungi is severely under-documented in West Africa. We conducted a broad regional sampling across five West African countries using soil eDNA to characterize the ECM as well as the total soil fungal community in gallery forests and savanna woodlands dominated by ECM host tree species. We subsequently sequenced the entire ITS region and much of the LSU region to infer a phylogeny for all detected soil fungal species. Utilizing a long read sequencing approach allows for higher taxonomic resolution by using the full ITS region, while the highly conserved LSU gene allows for a more accurate higher-level assignment of species hypotheses, including species without ITS-based taxonomy assignments. We detect no overall difference in species richness between gallery forests and woodlands. However, additional gallery forest plots and more samples per plot would have been needed to firmly conclude this pattern. Based on both abundance and richness, species from the families Russulaceae and Inocybaceae dominate the ECM fungal soil communities across both vegetation types. The community structure of both total soil fungi and ECM fungi was significantly influenced by vegetation types and showed strong correlation within plots. However, we found no significant difference in fungal community structure between samples collected adjacent to different host tree species within each plot. We conclude that within plots, the fungal community is structured more by the overall ECM host plant community than by the species of the individual host tree that each sample was collected from.

Studies examining the role of abiotic variables on fructification sequences of ectomycorrhizal symbionts (boletes), the extent and direction of these effects are quite rare in Africa. In the current study, we assessed the effects of microclimate on the distribution and productivity of boletes in Benin. Nine permanent plots of 2500 m 2 each split into 25 subplots of 100 m 2 were installed in three different vegetation types. The first vegetation type is dominated by Isoberlinia doka, the second by Isoberlinia tomentosa and the third by Uapaca togoensis. Abiotic variables, including soil temperature, air temperature, air relative humidity and soil moisture, were recorded every 30 min from June to October. Each plot was surveyed twice a week during the mushroom season over 3 years (2015, 2016 and 2017) to record the abundance and the fresh biomass.The effects of microclimate on boletes productivity were evaluated using generalised linear mixed models in R. Boletes give the largest natural production in July and the lowest in October. Only soil moisture has a significant negative influence on the abundance (p > 0.05). The fruiting periods of boletes are known according to the variability of the microclimatic parameters and the vegetation.

Fungi range among the most important organisms in the world thanks to their ecological roles in the ecosystems and their socio-economic importance for human beings. Still, the global fungal species richness is full of uncertainties as evidenced by various estimates. Estimating fungal species richness and diversity is raising many questions related to the sampling effort (in space and time). This study aims to determine the effect of the sampling technique on the diversity measure and natural productions of wild macromycetes in the soudano-guinean forests. Six concentric plots different in the sizes and in the shape were installed in the Isoberlinia doka dominated woodlands. We recorded the number of fruit bodies and the fresh biomass of the species for each plot from June to October 2017. Dendrometric parameters were assessed by counting individual trees with dbh ≥ 10 within plots. A mixed linear model was applied through lme4 package to assess the influence of the size and shape of the plots on the abundance and species richness of macromycetes. An analysis of variances was used to assess the influence of the size and shape of the plots on the fresh biomass. Results showed that the abundance is higher in square plots at sizes 400 and 625m² but the biomass does not different significantly from one shape of plot to another (P = 0.228). Fresh biomass is higher in rectangular plots compared to the square and circular ones. Highest values of specie richness are obtained in the 25 m² for circular plots.

Background: The ectomycorrhizal fungi display strong fluctuations during the mycological season. However, how abiotic parameters affect the fruiting sequences of ectomycorrhizal fungi and also the direction and extent of this effect are not yet tapped adequately. The present study seeks to assess the microclimate effect on the natural production of boletes. Nine permanent plots of 2500 m2 (50m x 50m) split into 25 subplots of 100 m2 (10m x 10m) were installed in three different vegetation dominated respectively by Isoberlinia doka, Isoberlinia tomentosa and Uapaca togoensis. Microclimatic parameters were recorded each 30 minutes throughout by mean of a Micro Station Data Logger - H21-002 the mycological seasons. Each plot was surveyed twice a week (from May to October) over three years (2015, 2016 and 2017) to record the presence/absence of fruit bodies and fresh biomass of boletes. To evaluate the effect of time and microclimate variables on natural production, we used mixed effects and generalized linear models using R version 3.5.3. Results: In total, during the three years (2015, 2016 and 2017), we recorded 14 species of boletes. Species richness does not change over time (P > 0.05). In addition, fresh biomass varies within years and vegetation (P < 0.05). The combination of year and month of collection has a significant effect on the number of fruit bodies (P < 0.05). Only the soil moisture has a significant positive influence on the species richness of boletes (P > 0.05). Conclusions: When the soil moisture decreases by four units, the number of fruit bodies of ectomycorrhizal fungi is significantly reduced by one unit. Therefore, above 0.25 m3 / m3 and below 0.05 m3 / m3 there is a decrease in the number of fruit bodies.