This data paper reports tree census data collected in a network of 34 forest sites in Japan. This is the largest forest data set freely available in Japan to date. The network is a part of the Monitoring Sites 1000 Project launched by the Ministry of the Environment, Japan. It covers subarctic to subtropical climate zones and the four major forest types in Japan. Forty-two permanent plots, usually 1 ha in size, were established in old-growth or secondary natural forests. Censuses of woody species ‡15 cm girth at breast height were conducted every year or once during 2004 to 2009. The data provide species abundance, survivorship and stem girth growth of 52,534 individuals of 334 tree and liana species. The censuses adopted common census protocol, which provide good opportunities for meta-analyses and comparative studies among forests. The data have been used for ecological studies as well as for the biodiversity reports published by the Ministry of the Environment.

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We investigated initial establishment and regeneration of an outlying isolated Fagus crenata forest stand at the northernmost boundary of its range in Hokkaido, northern Japan. The study site was located in the Sannosuke beech forest (42°46 0 48 00 N, 140°23 0 43 00 E), a representative outlying beech stand beyond its continuous range. A rectangular 0.75 ha plot was established on a southwest-facing slope and divided into 300 square sub-plots of 25 m 2 . Within each sub-plot, stems over 5 cm in diameter at breast height (DBH) were identified and measured. Furthermore, the location of stems over 10 cm in DBH (canopy stem) was recorded within each sub-plot, and their increment core samples were extracted. Wood from fallen logs was sampled to estimate the species composition of the coarse woody debris. Micro-relief of the plot was investigated by leveling with compasses for a 2.5 m 9 2.5 m grid system. In the plot, the population of F. crenata was divided into three sub-populations by their frequency distribution of age. The oldest sub-population, over 121 years old, had been established in small-localized gap in the plot. The sub-population between 81 and 120 years old and the sub-population less than 80 years old were regenerated after a landslide and windthrow in a 1954 typhoon, respectively. Furthermore, dominant species in the plot shifted from Quercus mongolica var. grosseserrata to F. crenata. Consequently, regeneration of F. crenata, i.e., expansion of forest stands, at the northernmost boundary of its range was primarily dependent on episodic natural disturbance, which may be responsible for the reduction of their migration rate in Hokkaido, northern Japan.