ABSTRACT. Daily milk, fat and protein yield and amount of somatic cells in cow milk are very important factors that influence milk performance traits. An association between polymorphisms in the kappa casein (CSN3) gene and milk production, composition and technical properties has been previously reported; however, this type of information is not available for the bovine β-carotene oxygenase 2 (BCO2) gene -the BCO2 gene has relationship with milk color and meat fat color, which is dependent on content of β-carotene. We analyzed these two genes and their relationship with milk performance traits (daily milk, fat and protein yield, somatic cell count, SCC) in one cattle population, Czech Fleckvieh (N = 152). All animals were milked twice a day and kept in the same environmental conditions. The Fleckvieh is a typical Czech cattle breed farming for milk and meat production. It is the most common breed in the Czech Republic. DNA was isolated from milk or from hairs. Genes were analyzed using PCR-RFLP, frequencies of alleles and genotypes were calculated and association analysis was performed using a GLM Procedure in SAS. Statistical analysis established that the CSN3 gene has no statistically significant influence on daily milk, fat and protein yield and SCC. Compared to other references this result can CSN3 and BCO2 gene polymorphisms in catle milk traits be explained by, e.g., small group of animals and different cattle breed. The BCO2 gene (genotypes AA and AG) shows a statistically significant relationship (P = 0.05) with daily milk, protein yield and SCC.
Genetic variability of four polymorphisms (CAPN1, CAST, SCD, and FASN) was evaluated and the relationships between them and the beef quality traits (tenderness and fatty acid composition) in Czech crossbred cattle population were assessed. Totally 331 animals were genotyped using multiplex PCR-RFLP. For the CAST NM174003.2:c.155C>T the CC genotype was associated with higher Warner-Bratzler shear force (CC > CT, P < 0.001; CC > TT, P < 0.05) and our results (CC > TT > CT) suggest a possible effect of overdominance. The CAPN1 AF252504.2:c.947G>C did not significantly influence the beef tenderness (strongly influenced by misbalance between the genotype frequencies) suggesting the breed specific effect of this marker. Our association study of the SCD AB075020:c.878T>C polymorphism revealed a positive effect of allele C on myristoleic acid content (CC > CT > TT, P < 0.01). The significant influence of FASN AF285607:g.17924A>G on fatty acid profile was confirmed in the content of myristoleic acid (AG > GG, P < 0.05), palmitoleic acid (AA > AG > GG, P < 0.05, P < 0.001), stearic acid (AA > GG, P < 0.05), myristic acid (AG > GG, P < 0.05), and palmitic acid (AG > GG, P < 0.05). Thus in our population the SNPs of FASN and SCD appeared to be useful markers for selection of animals according to the fatty acid profile as well as SNP of CAST for beef tenderness.
Nutria (Myocastor coypus) is a large rodent native to South America which was introduced worldwide originally with the intention of fur farming. Three colour forms (Standard, Moravian Silver, and Prestice Multicolour) fall into the Farm Animal Genetic Resources of the Czech Republic protected by the National Programme on Conservation and Utilization of Plant, Animal and Microbial Genetic Resources for Food and Agriculture coordinated by the National Focal Point. The objective of our investigation in the Czech Republic was to establish microsatellite panel for nutria and determine microsatellite variability in the local nutria population, levels of genetic diversity within and among subpopulations with respect to colour form and the levels of inbreeding within subpopulations. The genetic variability was studied in 64 animals by investigating 11 microsatellite markers (McoD214, McoD217, McoD59, McoD69, McoC124, McoC203, McoD60, McoB17, McoC118, McoA04, and McoD228) analysed by multicoloured capillary electrophoresis. The whole population showed a moderate level of genetic variability in terms of number of alleles (5 alleles per locus) or heterozygosity (50.4%) and the Prestice Multicolour form exhibited the highest level of diversity. Particular attention should be paid to organizing mate to minimise inbreeding, especially in the Standard colour form (F<sub>IS</sub> = 0.238) which showed the highest level of inbreeding out of the three colour forms. High combined exclusion probability (CEP) values (99.5, 94.5, and 99.9%) implied that the panel of microsatellite markers established in this study was usable for individual identification or routine parentage testing in nutria population in the Czech Republic.
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