The Capibaribe Estuary is a water body that crosses the Recife Metropolitan Area (RMA), one of the largest population centers in Brazil, and causes large pollutant loads and poor water quality. The fresh water inflow of wastewater from the RMA can account for three times the volume of the river discharge during the low discharge period. This article assesses the hydrodynamics and potential transport of particulate and dissolved scalars in this estuary. A field experiment was conducted to record the water level, current velocity, salinity, temperature and suspended particulate matter (SPM) contents during a full semi-diurnal tidal cycle. This experiment was performed during low river discharge and spring tide conditions. The estuary showed a partially mixed circulation pattern. The residual transport of water and salt were up estuary, while the SPM residual transport was down estuary. The former were understood as the effect of the residual circulation around the islands, while the latter was interpreted as a morphological factor inducing greater resuspension during the ebb, despite the symmetrical ebb and flood currents. This mechanism may transport SPM to the inner shelf, even under tide-dominated conditions when the opposite would be expected.