Building bridges between environmental and political agendas is essential nowadays in face of the increasing human pressure on natural environments, including wetlands. Wetlands provide critical ecosystem services for humanity and can generate a considerable direct or indirect income to the local communities. To meet many of the sustainable development goals, we need to move our trajectory from the current environmental destructive development to a wiser wetland use. The current article contain a proposed agenda for the Pantanal aiming the improvement of public policy for conservation in the Pantanal, one of the largest, most diverse, and continuous inland wetland in the world. We suggest and discuss a list of 11 essential interfaces between science, policy, and development in region linked to the proposed agenda. We believe that a functional science network can booster the collaborative capability to generate creative ideas and solutions to address the big challenges faced by the Pantanal wetland.

Brazil has a variety of aquatic ecosystems and rich freshwater biodiversity, but these components have been constantly damaged by the expansion of unsustainable activities. An array of different conservation strategies is needed, especially the creation of protected areas (PAs, hereafter). However, Brazil's PAs are biased towards terrestrial ecosystems and we argue that current PAs have limited efficacy in the protection of freshwater biodiversity. New PAs should better consider aquatic environments, covering entire basins, rivers and other freshwater habitats. We recommend ways to implement these PAs and provide guidance to avoid social impacts. Freshwater systems in Brazil provide essential goods and services but these ecosystems are being rapidly degraded and will be lost if not adequately protected.

The Pantanal's biodiversity constitutes a valuable natural resource, in economic, cultural, recreational, aesthetic, scientific and educational terms. The vegetation plus the seasonal productivity support a diverse and abundant fauna. Many endangered species occur in the region, and waterfowl are exceptionally abundant during the dry season. Losses of biodiversity and its associated natural habitats within the Pantanal occur as a result of unsustainable land use. Implementation of protected areas is only a part of the conservation strategy needed. We analyse biodiversity threats to the biome under seven major categories: 1) conversion of natural vegetation into pasture and agricultural crops, 2) destruction or degradation of habitat mainly due to wild fire, 3) overexploitation of species mainly by unsustainable fishing, 4) water pollution, 5) river flow modification with implantation of small hydroelectric plants, 6) unsustainable tourism, and 7) introduction of invasive exotic species.

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The Pantanal is fed by tributaries of the Upper Paraguay River in the center of South America, mainly in Brazil. The landscape is marked by contrasts between the seasonally floodplain (Pantanal) and the surrounding highland (Planalto). The floodplain regulates highland riverine discharge by temporarily storing water during flood season and can enhance water loss by evapotranspiration and infiltration. The flood level gradient creates a range of major habitats in a complex mosaic of annual and pluri-annual seasonal patterns. The Pantanal ecosystem is characterized by recurrent shallow water flooding near the surface of the substrate, due to the slow drainage of the vast plain inundated for longer, with variable conditions regarding to physical, chemical, and biological traits. Water discharge, geomorphology, type of soil and biodiversity are the main ecosystem components of the Pantanal. The complex vegetation cover and the seasonal productivity support a diverse and abundant fauna. Many endangered species still occur in health population conditions, including jaguar (Panthera onca). Waterfowl are exceptionally abundant during the dry season. Deforestation with the loss of natural habitats and their associated biodiversity in the Pantanal has been drastic during the last decades, particularly in the upland region of the Cerrado plateaus surrounding the flooding plain. Another threat is unsustainable agricultural and cattle ranching practices, which convert the natural vegetation into pastures and plantation crops such as soybean, especially on the surrounding plateaus where the river springs are located. Fires caused by humans are severe and have become part of the annual productivity cycle for cattle ranch owners. Recently there has been river flow modification due to implantation of small hydroelectric plants on the upland plateaus. The aim of this study is to put together a comprehensive report on the role of the flood pulse on the biodiversity using our research experience in the region and also reviewing published information.