Imaging the Universe during the first hundreds of millions of years remains one of the exciting challenges facing modern cosmology. Observations of the redshifted 21 cm line of atomic hydrogen offer the potential of opening a new window into this epoch. This will transform our understanding of the formation of the first stars and galaxies and of the thermal history of the Universe. A new generation of radio telescopes is being constructed for this purpose with the first results starting to trickle in. In this review, we detail the physics that governs the 21 cm signal and describe what might be learnt from upcoming observations. We also generalize our discussion to intensity mapping of other atomic and molecular lines.

Many models of early structure formation predict a period of heating immediately preceding reionization, when X‐rays raise the gas temperature above that of the cosmic microwave background. These X‐rays are often assumed to heat the intergalactic medium (IGM) uniformly, but in reality will heat the gas more strongly closer to the sources. We develop a framework for calculating fluctuations in the 21‐cm brightness temperature that originate from this spatial variation in the heating rate. High‐redshift sources are highly clustered, leading to significant gas temperature fluctuations (with fractional variations ∼40 per cent, peaking on k∼ 0.1 Mpc−1 scales). This induces a distinctive peak‐trough structure in the angle‐averaged 21‐cm power spectrum, which may be accessible to the proposed Square Kilometre Array. This signal reaches the ∼10 mK level, and is stronger than that induced by Lyα flux fluctuations. As well as probing the thermal evolution of the IGM before reionization, this 21‐cm signal contains information about the spectra of the first X‐ray sources. Finally, we consider disentangling temperature, density and Lyα flux fluctuations as functions of redshift.

The Square Kilometre Array (SKA) will have a low frequency component (SKA-low) which has as one of its main science goals the study of the redshifted 21cm line from the earliest phases of star and galaxy formation in the Universe. This 21cm signal provides a new and unique window both on the time of the formation of the first stars and accreting black holes and the subsequent period of substantial ionization of the intergalactic medium. The signal will teach us fundamental new things about the earliest phases of structure formation, cosmology and even has the potential to lead to the discovery of new physical phenomena. Here we present a white paper with an Executive SummaryThe Square Kilometre Array (SKA) will have a low frequency component (AA-low/SKA-low 1 ) which has as one of its main science goals the study of the redshifted 21cm line from the earliest phases of star and galaxy formation in the Universe (see SKA Memo 125). It is during this phase that the first building blocks of the galaxies that we see around us today, including our own Milky Way, were formed. It is a crucial period for understanding the history of the Universe and one for which we have currently very little observational data.We divide the period into two different phases based on the physical processes which affect the Intergalactic Medium. The first period, which we call the Cosmic Dawn, saw the formation of the first stars and accreting black holes, which changed the quantum state of the still neutral Intergalactic Medium. The second period, known as the Epoch of Reionization, is the one during which large areas between the galaxies were photo-ionized by the radiation produced in galaxies and which ended when the Intergalactic Medium had become completely ionized.Observations of the redshifted 21-cm line with SKA will provide a new and unique window on the entire period of Cosmic Dawn and Reionization. The signal is sensitive to the emergence of the first stellar populations, radiation from growing massive black holes and the formation of larger groups of galaxies and bright quasars. At the same time it maps the distribution of most of the baryonic matter in the Universe. The study of the redshifted 21cm line will teach us fundamental new things about the earliest phases of structure formation and cosmology. It even has the potential to lead to the discovery of new physical phenomena. Here we present an overview of the science questions that SKA-low can address, how we plan to tackle these questions and what this implies for the basic design of the telescope.The redshifted 21cm signal will be analyzed with different techniques, which each come with their own requirements for the SKA: (i) Tomography, (ii) power-spectra and higher-order statistics, (iii) hydrogen absorption, (iv) global/total-intensity signal. Whereas all precursors/pathfinders aim to study the signal statistically through its power spectrum, SKA will be able to image the neutral hydrogen distribution directly and its focus will therefore be more on tomograph...

Context. It is well established that between 380 000 and 1 billion years after the Big Bang the Inter Galactic Medium (IGM) underwent a "phase transformation" from cold and fully neutral to warm (≈10 4 K) and ionized. Whether this phase transformation was fully driven and completed by photoionization by young hot stars is a question of topical interest in cosmology. Aims. We propose here that besides the ultraviolet radiation from massive stars, feedback from accreting black holes in high-mass X-ray binaries (BH-HMXBs) was an additional, important source of heating and reionization of the IGM in regions of low gas density at large distances from star-forming galaxies. Methods. We use current theoretical models on the formation and evolution of primitive massive stars of low metallicity, and the observations of compact stellar remnants in the near and distant universe, to infer that a significant fraction of the first generations of massive stars end up as BH-HMXBs. Results. The total number of energetic ionizing photons from an accreting stellar black hole in an HMXB is comparable to the total number of ionizing photons of its progenitor star. However, the X-ray photons emitted by the accreting black hole are capable of producing several secondary ionizations and the ionizing power of the resulting black hole could be greater than that of its progenitor. Feedback by the large populations of BH-HMXBs heats the IGM to temperatures of ≈10 4 K and maintains it ionized on large distance scales. Conclusions. BH-HMXBs determine the early thermal history of the universe and maintain it as ionized over large volumes of space in regions of low density. This has a direct impact on the properties of the faintest galaxies at high redshifts, the smallest dwarf galaxies in the local universe, and on the existing and future surveys at radio wavelengths of atomic hydrogen in the early universe.

We quantify the prospects for using emission lines from rotational transitions of the CO molecule to perform an "intensity mapping" observation at high redshift during the Epoch of Reionization (EoR). The aim of CO intensity mapping is to observe the combined CO emission from many unresolved galaxies, to measure the spatial fluctuations in this emission, and to use this as a tracer of large-scale structure at very early times in the history of our universe. This measurement would help determine the properties of molecular clouds-the sites of star formation-in the very galaxies that reionize the universe. We further consider the possibility of cross-correlating CO intensity maps with future observations of the redshifted 21 cm line. The cross spectrum is less sensitive to foreground contamination than the auto power spectra, and can therefore help confirm the high-redshift origin of each signal. Furthermore, the cross spectrum measurement would help extract key information about the EoR, especially regarding the size distribution of ionized regions. We discuss uncertainties in predicting the CO signal at high redshift, and discuss strategies for improving these predictions. Under favorable assumptions and feasible specifications for a CO survey mapping the CO(2-1) and CO(1-0) lines, the power spectrum of CO emission fluctuations and its cross spectrum with future 21 cm measurements from the Murchison Widefield Array are detectable at high significance.

The potential use of the redshifted 21 cm line from neutral hydrogen for probing the epoch of reionization is motivating the construction of several low-frequency interferometers. There is also much interest in the possibility of constraining the initial conditions from inflation and the nature of the dark matter and dark energy by probing the power-spectrum of density perturbations in three dimensions and on smaller scales than probed by the microwave background anisotropies. Theoretical understanding of the 21 cm signal has been fragmented into different regimes of physical interest. In this paper, we make the first attempt to describe the full redshift evolution of the 21 cm signal between 0 < z < 300.We include contributions to the 21 cm signal from fluctuations in the gas density, temperature and neutral fraction, as well as the Lyα flux, and allow for a post-reionization signal from damped Lyα systems. Our comprehensive analysis provides a useful foundation for optimizing the design of future arrays whose goal is to separate the particle physics from the astrophysics, either by probing the peculiar velocity distortion of the 21 cm power spectrum, or by extending the 21 cm horizon to z 25 before the first galaxies had formed, or to z 6 when the residual pockets of hydrogen trace large scale structure. PACS numbers: 98.80 Hw, 95.35.+d, 98.62.-g 1

We present a detailed overview of the cosmological surveys that we aim to carry out with Phase 1 of the Square Kilometre Array (SKA1) and the science that they will enable. We highlight three main surveys: a medium-deep continuum weak lensing and low-redshift spectroscopic HI galaxy survey over 5 000 deg2; a wide and deep continuum galaxy and HI intensity mapping (IM) survey over 20 000 deg2 from $z = 0.35$ to 3; and a deep, high-redshift HI IM survey over 100 deg2 from $z = 3$ to 6. Taken together, these surveys will achieve an array of important scientific goals: measuring the equation of state of dark energy out to $z \sim 3$ with percent-level precision measurements of the cosmic expansion rate; constraining possible deviations from General Relativity on cosmological scales by measuring the growth rate of structure through multiple independent methods; mapping the structure of the Universe on the largest accessible scales, thus constraining fundamental properties such as isotropy, homogeneity, and non-Gaussianity; and measuring the HI density and bias out to $z = 6$ . These surveys will also provide highly complementary clustering and weak lensing measurements that have independent systematic uncertainties to those of optical and near-infrared (NIR) surveys like Euclid, LSST, and WFIRST leading to a multitude of synergies that can improve constraints significantly beyond what optical or radio surveys can achieve on their own. This document, the 2018 Red Book, provides reference technical specifications, cosmological parameter forecasts, and an overview of relevant systematic effects for the three key surveys and will be regularly updated by the Cosmology Science Working Group in the run up to start of operations and the Key Science Programme of SKA1.

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