Transcription factor IID (TFIID) recognizes core promoters and supports preinitiation complex (PIC) assembly for RNA polymerase (Pol) II-mediated eukaryotic transcription. Here, we determined the structures of human TFIID-based PIC in three stepwise assembly states and revealed two-track PIC assembly: stepwise promoter deposition to Pol II and extensive modular reorganization on track I (on TATA-DBE promoters) versus direct promoter deposition on track II (on TATA-only and TATA-less promoters). The two tracks converge at ~50-subunit holo-PIC in identical conformation, whereby TFIID stabilizes PIC organization and supports loading (CDK)-activating kinase (CAK) onto Pol II and CAK-mediated phosphorylation of Pol II C-terminal domain. Unexpectedly, TBP of TFIID similarly bends TATA box and TATA-less promoters in PIC. Our study provides structural visualization of stepwise PIC assembly on highly diversified promoters.

Mechanistic target of rapamycin (mTOR) complex 2 (mTORC2) plays an essential role in regulating cell proliferation through phosphorylating AGC protein kinase family members, including AKT, PKC and SGK1. The functional core complex consists of mTOR, mLST8, and two mTORC2-specific components, Rictor and mSin1. Here we investigated the intermolecular interactions within mTORC2 complex and determined its cryo-electron microscopy structure at 4.9 Å resolution. The structure reveals a hollow rhombohedral fold with a 2-fold symmetry. The dimerized mTOR serves as a scaffold for the complex assembly. The N-terminal half of Rictor is composed of helical repeat clusters and binds to mTOR through multiple contacts. mSin1 is located close to the FRB domain and catalytic cavity of mTOR. Rictor and mSin1 together generate steric hindrance to inhibit binding of FKBP12-rapamycin to mTOR, revealing the mechanism for rapamycin insensitivity of mTORC2. The mTOR dimer in mTORC2 shows more compact conformation than that of mTORC1 (rapamycin sensitive), which might result from the interaction between mTOR and Rictor-mSin1. Structural comparison shows that binding of Rictor and Raptor (mTORC1-specific component) to mTOR is mutually exclusive. Our study provides a basis for understanding the assembly of mTORC2 and a framework to further characterize the regulatory mechanism of mTORC2 pathway.

The 1.3-MDa transcription factor IID (TFIID) is required for preinitiation complex (PIC) assembly and RNA polymerase II (Pol II)-mediated transcription initiation on almost all genes. The 26-subunit Mediator stimulates transcription and cyclin-dependent kinase 7 (CDK7)-mediated phosphorylation of Pol II C-terminal domain (CTD). We determined the structures of human Mediator in the Tail module-extended (at near-atomic resolution) and Tail-bent conformations and structures of TFIID-based PIC-Mediator (76 polypeptides, ~4.1 MDa) in four distinct conformations. PIC-Mediator assembly induces concerted reorganization (Head-tilting and Middle-down) of Mediator and creates a Head-Middle sandwich, which stabilizes two CTD segments and brings CTD to CDK7 for phosphorylation, suggesting a CTD-gating mechanism favorable for phosphorylation. The TFIID-based PIC architecture modulates Mediator organization and TFIIH stabilization, underscoring the significance of TFIID in orchestrating PIC-Mediator assembly.

Wavelength tunability of lasers is one of the most important parameters for achieving practical applications such as optical communication, environmental monitoring, and spectroscopy analysis. A wide‐wavelength tunable laser is demonstrated on a single non‐doped CdSe nanowire (NW) without changing pumping intensity and position, but by simply gradually cutting the NW shorter instead. The corresponding mechanism for the large wavelength shifts is determined as the absorption‐emission‐absorption (AEA) process in polar CdSe NWs.

The composition of polymer blends near interfaces can differ from the average blend composition because the attraction of each polymer toward surfaces is controlled by its chemistry, size, and architecture. In this work, we studied thin film blends of bottlebrush copolymers and linear homopolymers to understand the enthalpic and entropic effects that drive preferential segregation of one constituent to film interfaces. Bottlebrush copolymers containing polystyrene (PS) and poly­(methyl methacrylate) (PMMA) side chains were blended with either linear PS or linear PMMA, and time-of-flight secondary ion mass spectroscopy was used to quantify the distribution of bottlebrushes through the film thickness as a function of homopolymer type, homopolymer molecular weight, and processing conditions. We found that the bottlebrush copolymers segregated to air and substrate interfaces above a critical molecular weight of the linear homopolymer, consistent with an entropic preference for chain ends and shorter chains toward the interfaces. This segregation was used to tailor the surface wettability of blend films using bottlebrush additives as a minority component. Modeling using self-consistent field theory highlighted effects of conformational entropy and enthalpic interactions in driving almost complete segregation from the interior of the films toward interfaces. Furthermore, enthalpic interactions were predicted to cause lateral phase segregation in cases where the homopolymer is preferred over the bottlebrush copolymer at the substrate, an effect that was also observed in experiments. This study demonstrates that bottlebrush copolymer additives can be designed to spontaneously segregate to surfaces in thermal blends, providing a possible route to decouple surface properties from bulk properties.

Background Exposure to inorganic arsenic (iAs), class I carcinogen, affects several hundred-million people worldwide. Once absorbed, iAs is converted to monomethylated (MMA) and then dimethylated forms (DMA), with methylation facilitating urinary excretion. The abundance of each species in urine relative to their sum (iAs%, MMA%, and DMA%), varies across individuals, reflecting differences in arsenic metabolism capacity. Methods The association of arsenic metabolism phenotypes with participant characteristics and arsenical skin lesions was characterized among 4,794 participants in the Health Effects of Arsenic Longitudinal Study (Araihazar, Bangladesh). Metabolism phenotypes include those obtained from principal components (PC) analysis of arsenic species. Results Two independent PCs were identified: PC1 appears to represent capacity to produce DMA (2nd methylation step), and PC2 appears to represent capacity to convert iAs to MMA (1st methylation step). PC 1 was positively associated (p <0.05) with age, female sex, and BMI, while negatively associated with smoking, arsenic exposure, education, and land ownership. PC2 was positively associated with age and education but negative associated with female sex and BMI. PC2 was positively associated with skin lesion status, while PC1 was not. 10q24.32/AS3MT region polymorphisms were strongly associated with PC1, but not PC2. Patterns of association for most variables were similar for PC1 and DMA%, and for PC2 and MMA% with the exception of arsenic exposure and SNP associations. Conclusions Two distinct arsenic metabolism phenotypes show unique associations with age, sex, BMI, 10q24.32 polymorphisms, and skin lesions. Impact: This work enhances our understanding of arsenic metabolism kinetics and toxicity risk profiles.

A synbio strategy for efficient sugar-to-electricity conversion.

Tuberous sclerosis complex (TSC) integrates upstream stimuli and regulates cell growth by controlling the activity of mTORC1. TSC complex functions as a GTPase-activating protein (GAP) towards small GTPase Rheb and inhibits Rheb-mediated activation of mTORC1. Mutations in TSC genes cause tuberous sclerosis. In this study, the near-atomic resolution structure of human TSC complex reveals an arch-shaped architecture, with a 2:2:1 stoichiometry of TSC1, TSC2, and TBC1D7. This asymmetric complex consists of two interweaved TSC1 coiled-coil and one TBC1D7 that spans over the tail-to-tail TSC2 dimer. The two TSC2 GAP domains are symmetrically cradled within the core module formed by TSC2 dimerization domain and central coiled-coil of TSC1. Structural and biochemical analyses reveal TSC2 GAP-Rheb complimentary interactions and suggest a catalytic mechanism, by which an asparagine thumb (N1643) stabilizes γ-phosphate of GTP and accelerate GTP hydrolysis of Rheb. Our study reveals mechanisms of TSC complex assembly and GAP activity.