BackgroundThe time it takes to isolate individuals from environmental samples and then extract DNA from each individual is one of the problems with generating molecular data from meiofauna such as eutardigrades and bdelloid rotifers. The lack of consistent morphological information and the extreme abundance of these classes makes morphological identification of rare, or even common cryptic taxa a large and unwieldy task. This limits the ability to perform large-scale surveys of the diversity of these organisms.Here we demonstrate a culture-independent molecular survey approach that enables the generation of large amounts of eutardigrade and bdelloid rotifer sequence data directly from soil. Our PCR primers, specific to the 18s small-subunit rRNA gene, were developed for both eutardigrades and bdelloid rotifers.ResultsThe developed primers successfully amplified DNA of their target organism from various soil DNA extracts. This was confirmed by both the BLAST similarity searches and phylogenetic analyses. Tardigrades showed much better phylogenetic resolution than bdelloids. Both groups of organisms exhibited varying levels of endemism.ConclusionThe development of clade-specific primers for characterizing eutardigrades and bdelloid rotifers from environmental samples should greatly increase our ability to characterize the composition of these taxa in environmental samples. Environmental sequencing as shown here differs from other molecular survey methods in that there is no need to pre-isolate the organisms of interest from soil in order to amplify their DNA. The DNA sequences obtained from methods that do not require culturing can be identified post-hoc and placed phylogenetically as additional closely related sequences are obtained from morphologically identified conspecifics. Our non-cultured environmental sequence based approach will be able to provide a rapid and large-scale screening of the presence, absence and diversity of Bdelloidea and Eutardigrada in a variety of soils.
Twenty-four biotin-labeled recombinant-DNA probes which contained putative unique-sequence Drosophila melanogaster DNA were hybridized to larval salivary-gland chromosomes of D. melanogaster and Drosophila virilis. All probes hybridized to D. melanogaster chromosomes at the expected sites. However, one probe hybridized to at least 16 additional sites, and one hybridized to one additional site. Thirteen probes hybridized strongly to D. virilis chromosomes, four hybridized weakly and infrequently, and seven did not hybridize. Probes representing two multigene families (beta-tubulin and yolk-protein) hybridized as would be expected if all sites had been conserved in the two species on the same chromosomal elements. The multiple hybridization sites of a third probe which may represent a multigene family were also conserved. The results were consistent with H.J. Muller's proposal that chromosomal elements have been conserved during evolution of this genus.
Establishment and maintenance of foraging trails to an artificial nectar source by ten colonies of Paraponera clavata (Fabr.) in Panama is reported. The first forager to locate the artificial nectar source was responsible for recruiting additional foragers and for marking trails to orient these foragers. More than half of the trail marking was performed by the first two ants to mark the path back to the colony, although up to 11 ants per colony per hour marked trails. The number of trail marks and the number of marking ants decreased through time, presumably as foragers learned the location of the artificial nectar source. Four categories of recruits were noted: markers, foragers, patrollers, and visitors.
SUMMARYLittle is known ofthe mechanisms governing nitrogen metabolism and stress tolerance in woody plants of subtropical southeast African savannas, although many of the more widely occurring genera, particularly Acacia and Combretum species, include valuable multi-purpose trees. Basal nitrate reductase activities in vigorous leaves from 59 species and five savanna areas were used as a measure of nitrate availability. Consistently low activities were found in many of the legumes and in members of the Combretaceae. When shoots from 35 of these same species were provided with supplementary nitrate solution, increased reductase activity was recorded in a number of taxa, including non-nodulating legumes belonging to the Caesalpinioideae. Nodulating legumes did not behave in the same way. Either proline or quaternary ammonium compounds, examples of stress metabolites, accumulated in the shoots of a range of taxa belonging to a number of families. The highest concentrations occurred in shoots collected from the driest areas. Amounts of tannin were high in some species but showed no consistent pattern.
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