Microbially mediated anaerobic oxidation of methane (AOM) moderates the input of methane, an important greenhouse gas, to the atmosphere by consuming methane produced in various marine, terrestrial, and subsurface environments. AOM coupled to sulfate reduction has been most extensively studied because of the abundance of sulfate in marine systems, but electron acceptors otherthan sulfate are more energetically favorable. Phylogenetic trees based on 16S rRNA gene clone libraries derived from microbial communities where AOM occurs show evidence of diverse, methanotrophic archaea (ANME) closely associated with sulfate-reducing bacteria, but these organisms have not yet been isolated as pure cultures. Several biochemical pathways for AOM have been proposed, including reverse methanogenesis, acetogenesis, and methylogenesis, and both culture-dependent and independent techniques have provided some clues to howthese communities function. Still, questions remain regarding the diversity, physiology, and metabolic restrictions of AOM-related organisms.

Wheat (Triticum spp.) dominates dryland grain crop production in the North American Great Plains and other regions with semi‐arid steppe climates. A common practice is to alternate winter or spring wheat with a 14‐ to 21‐mo fallow period to allow for soil‐water recharge, despite economic inefficiencies and environmental degradation. Replacing fallow with non‐cereal grain and seed crops often reduces future wheat yields due to increased water stress during grain fill. The use of annual forages may not have the disadvantages associated with grain and seed crops. The objective of this review was to determine benefits and challenges of incorporating annual forages into dryland wheat systems in semi‐arid steppe climates, using the Great Plains within the United States as a model system. Results indicate that: (a) cool‐ and warm‐season, annual grass and broadleaf species can be grown for forage across the region; (b) forage production will be less risky than grain and seed crop production under predicted climate‐change scenarios; (c) grazing annual forages may offer advantages (e.g., nutrient cycling, improved soil structure, added revenue from livestock) over mechanically harvesting annual forages; (d) the lack of infrastructure and local markets impede the use of annual forages to diversify wheat‐based cropping systems in the region; and (e) limited networking among researchers hinders the advancement in knowledge on how annual forages can be used to improve dryland wheat system resilience.

The biodegradation potential of insensitive munition melt cast formulations IMX101 and IMX104 was investigated in two unamended training range soils under aerobic and anaerobic growth conditions. Changes in community profiles in soil microcosms were monitored via high-throughput 16S rRNA sequencing over the course of the experiments to infer key microbial phylotypes that may be linked to IMX degradation. Complete anaerobic biotransformation occurred for IMX101 and IMX104 constituents 2,4-dinitroanisole (DNAN) and 3-nitro-1,2,4-triazol-5-one during the 30-day incubation period with Camp Shelby (CS) soil. By comparison, soil from Umatilla chemical depot demonstrated incomplete DNAN degradation with reduced transformation rates for both IMX101 and IMX104. Aerobic soil microcosms for both soils demonstrated reduced transformation rates compared to anaerobic degradation for all IMX constituents with DNAN the most susceptible to biotransformation by CS soil. Overall, IMX constituents hexahydro-1,3,5-trinitro-1,3,5-triazine and 1-nitroguanidine did not undergo significant transformation. In CS soil, organisms that have been associated with explosives degradation, namely members of the Burkholderiaceae, Bacillaceae, and Paenibacillaceae phylotypes increased significantly in anaerobic treatments whereas Sphingomonadaceae increased significantly in aerobic treatments. Collectively, these data may be used to populate fate and transport models to provide more accurate estimates for assessing environmental costs associated with release of IMX101 and IMX104.

Aims:  Hexahydro‐1,3,5‐trinitro‐1,3,5,‐triazine (RDX) is a cyclic nitramine explosive that is a major component in many high‐explosive formulations and has been found as a contaminant of soil and groundwater. The RDX‐degrading gene locus xplAB, located on pGKT2 in Gordonia sp. KTR9, is highly conserved among isolates from disparate geographical locations suggesting a horizontal gene transfer (HGT) event. It was our goal to determine whether Gordonia sp. KTR9 is capable of transferring pGKT2 and the associated RDX degradation ability to other bacteria. Methods and Results:  We demonstrate the successful conjugal transfer of pGKT2 from Gordonia sp. KTR9 to Gordonia polyisoprenivorans, Rhodococcus jostii RHA1 and Nocardia sp. TW2. Through growth and RDX degradation studies, it was demonstrated that pGKT2 conferred to transconjugants the ability to degrade and utilize RDX as a nitrogen source. The inhibitory effect of exogenous inorganic nitrogen sources on RDX degradation in transconjugant strains was found to be strain specific. Conclusions:  Plasmid pGKT2 can be transferred by conjugation, along with the ability to degrade RDX, to related bacteria, providing evidence of at least one mechanism for the dissemination and persistence of xplAB in the environment. Significance and Impact of Study:  These results provide evidence of one mechanism for the environmental dissemination of xplAB and provide a framework for future field relevant bioremediation practices.

Dual-use cover/green manure (CGM) crops and animal manure are used to supply nitrogen (N) and phosphorus (P) to organically grown field crops. A comprehensive review of previous research was conducted to identify how CGM crops and animal manure have been used to meet N and P needs of organic field crops, and to identify knowledge gaps to direct future research efforts. Results indicate that: (a) CGM crops are used to provide N to subsequent cash crops in rotations; (b) CGM-supplied N generally can meet field crop needs in warm, humid regions but is insufficient for organic grain crops grown in cool and sub-humid regions; (c) adoption of conservation tillage practices can create or exacerbate N deficiencies; (d) excess N and P can result where animal manures are accessible if application rates are not carefully managed; and (e) integrating animal grazing into organic field crop systems has potential benefits but is generally not practiced. Work is needed to better understand the mechanisms governing the release of N by CGM crops to subsequent cash crops, and the legacy effects of animal manure applications in cool and sub-humid regions. The benefits and synergies that can occur by combining targeted animal grazing and CGMs on soil N, P, and other nutrients should be investigated. Improved communication and networking among researchers can aid efforts to solve soil fertility challenges faced by organic farmers when growing field crops in North America and elsewhere.

Organic farmers have identified soil fertility and weed management as the two highest research priority areas. No review exists of research on soil nutrient management in organic field crop systems. We conducted a comprehensive review to identify the principles and factors governing nutrient management, knowledge gaps, and future research needs in organic grain and other field crop systems in Canada and the United States. We compared results from research conducted in different climates, soils, and crop rotational sequences. Results indicate that (i) dual‐use cover/green manure crops and/or animal manure are the most common sources of plant available N and other nutrients in organic field crop systems; (ii) soil nutrient deficiencies can develop through sole reliance on cover/green manure crops; (iii) dependence on animal manure can lead to N and P excesses; (iv) conventional soil testing procedures may not accurately predict crop nutrient needs; (v) greater knowledge of microbial processes governing nutrient cycling is needed; and (vi) better understanding of the impact of weeds on soil fertility may create weed and nutrient management synergies. Knowledge gaps include a lack in understanding of how the soil and plant biomes influence nutrient‐use efficiency and how crop diversity and rotations impact soil fertility, sustainability, and resilience in organic field crop systems. Likewise, interactions between weeds, crops, soil fertility, and weed management strategies are poorly understood. Core Ideas Soil, climate, fertility sources, and land use impact organic nutrient management strategies. Cover/green manure crops and animal manures are used to maintain soil fertility on organic farms. Conventional soil testing may not be ideally suited to organic systems. Tracking soil nutrient temporal changes can improve comprehensive nutrient management plans. More research of how weeds and soil microbial community structure/function impact nutrient cycling and crop production is needed.

The growth characteristics of Thermosynechococcus elongatus on elevated CO2 were studied in a photobioreactor. Cultures were able to grow on up to 20% CO2. The maximum productivity and CO2 fixation rates were 0.09 ± 0.01 and 0.17 ± 0.01 mg ml−1 day−1, respectively, for cultures grown on 20% CO2. Three major carbon pools—lipids, polyhydroxybutyrates (PHBs), and glycogen—were measured. These carbon stores accounted for 50% of the total biomass carbon in cultures grown on atmospheric CO2 (no supplemental CO2), but only accounted for 30% of the total biomass carbon in cultures grown on 5–20% CO2. Lipid content was approximately 20% (w/w) under all experimental conditions, while PHB content reached 14.5% (w/w) in cultures grown on atmospheric CO2 and decreased to approximately 2.0% (w/w) at 5–20% CO2. Glycogen levels did not vary significantly and remained about 1.4% (w/w) under all test conditions. The maximum amount of CO2 sequestered over the course of the nine-day chemostat experiment was 1.15 g l−1 in cultures grown on 20% CO2.

bThe transcriptome of RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading strain Gordonia sp. strain KTR9 and its glnR mutant were studied as a function of nitrogen availability to further investigate the observed ammonium-mediated inhibition of RDX degradation. The results indicate that nitrogen availability is a major determinant of RDX degradation and xplA gene expression in KTR9.