BackgroundManagement types and their intensity may vary according to indicators such as: (1) practices complexity, (2) degree of techniques specialization, (3) occurrence and types of social regulations, (4) artificial selection intensity, (5) energy invested, (6) tools types, and (7) amounts of resources obtained. Management types of edible plants were characterized and analyzed in Náhuatl communities of the Tehuacán Valley. We expected that both natural and human pressures generate risk on plant resources availability, influencing human responses of management directed to decrease risk. We particularly hypothesized that magnitude of risk would be a direct function of human pressures favored by cultural and economic value and ecological factors such as scarcity (restricted distribution and abundance). Management practices may decrease risk of plant resources, more effectively when they are more intense; however, absence or insufficiency of management practices on endangered plants may favor loss of their populations. Understanding current management motives and their consequences on the purpose of ensuring availability of plant resources might allow us to understand similar processes occurring in the past. This issue is particularly important to be studied in the Tehuacán Valley, where archaeologists documented possible scenarios motivating origins of plant management by agriculture during prehistory.MethodsThrough ethnobotanical collecting, 55 semi-structured and free listing interviews we inventoried edible plant species used in five villages of Coyomeapan, Mexico. We identified: (1) native plant species whose products are obtained exclusively through simple gathering, (2) native species involving simple gathering and other management types, and (3) non-native species managed by agricultural management. We conducted in depth studies on the 33 native species managed through gathering and other types of practices. We carried out a total of 660 sessions of detailed interviews to 20 households randomly selected. We showed to people voucher specimens and photos of the sample of species chosen and documented their cultural and economic values. Spatial availability of these plant species was evaluated through vegetation sampling. Values for each cultural, economic, and ecological indicator were codified and averaged or summed and weighed according to frequency of interviewees’ responses or ecological conditions per plant species. With the standardized values of these indicators we performed a PCA and scores of the first principal component were considered as a risk index, which summarizes information of thirteen indicators of human use, demand and scarcity of each plant species. Similarly, eleven indicators of energy invested, complexity, tools and management strategies were used for performing PCA and scores of the first principal component were considered as management intensity index for each plant species. A linear regression analysis was performed to analyze the relation between risk and management intensity ind...

In order to identify genetic factors related to thyroid cancer susceptibility, we adopted a candidate gene approach. We studied tag- and putative functional SNPs in genes involved in thyroid cell differentiation and proliferation, and in genes found to be differentially expressed in thyroid carcinoma. A total of 768 SNPs in 97 genes were genotyped in a Spanish series of 615 cases and 525 controls, the former comprising the largest collection of patients with this pathology from a single population studied to date. SNPs in an LD block spanning the entire FOXE1 gene showed the strongest evidence of association with papillary thyroid carcinoma susceptibility. This association was validated in a second stage of the study that included an independent Italian series of 482 patients and 532 controls. The strongest association results were observed for rs1867277 (OR[per-allele] = 1.49; 95%CI = 1.30–1.70; P = 5.9×10−9). Functional assays of rs1867277 (NM_004473.3:c.−283G>A) within the FOXE1 5′ UTR suggested that this variant affects FOXE1 transcription. DNA-binding assays demonstrated that, exclusively, the sequence containing the A allele recruited the USF1/USF2 transcription factors, while both alleles formed a complex in which DREAM/CREB/αCREM participated. Transfection studies showed an allele-dependent transcriptional regulation of FOXE1. We propose a FOXE1 regulation model dependent on the rs1867277 genotype, indicating that this SNP is a causal variant in thyroid cancer susceptibility. Our results constitute the first functional explanation for an association identified by a GWAS and thereby elucidate a mechanism of thyroid cancer susceptibility. They also attest to the efficacy of candidate gene approaches in the GWAS era.

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Plant Management in the Tehuacán-Cuicatlán Valley, Mexico. Plant management types currently practiced in the Tehuacán-Cuicatlán Valley, México, were documented and analyzed based on ethnobotanical studies conducted in 13 villages with six indigenous groups and Mestizo people. The information was organized in a data base, and then detailed and guided to a consensus through six workshops carried out by ethnobotanists working in the area. From a total of 1,608 useful plant species, we identified 610 with at least one management type other than simple gathering. Managed species are mainly used as food, fodder, medicinal, and ornamental, and they belong to 101 plant families. The higher species numbers were recorded in Cactaceae, Asteraceae, Fabaceae, Crassulaceae, and Agavaceae. Nearly 60% of the managed species are native to the region and the rest are introduced from other regions of Mexico and the world. In total, 400 species are ex situ managed out of their natural environments through seed sowing and/or planting their vegetative propagules or entire young plants; 373 species are in situ managed in their natural habitats as follows: all these species are deliberately left standing during vegetation clearance, 76 species are also enhanced intentionally favoring their abundance through modifications of their habitat, or directly by planting their propagules, and 51 receive protection through regulations, particular strategies of extraction, and actions against herbivores, competitors, freezing, radiation, and drought. Most management forms involve artificial selection at different intensity levels. The information allows visualizing co-occurrence of incipient and advanced forms of management at different intensity levels within and among species, which helps to postulate testable hypotheses on factors influencing plant management and domestication in an important area for studying the origins of agriculture.Manejo de plantas en el Valle de Tehuacán-Cuicatlán, México. Se documentaron los diferentes tipos de manejo de plantas que practican actualmente los pobladores del Valle de Tehuacán-Cuicatlán, México. El análisis se basa en estudios etnobotánicos llevados a cabo en 13 comunidades campesinas con seis grupos indígenas y poblados mestizos. La información se organizó en una base de datos, la cual posteriormente se detalló y se consensó a través de seis talleres en los que participaron los etnobotánicos trabajando en la región y cuyos trabajos son la base de esta investigación. De un total de 1,608 especies de plantas útiles, identificamos 610 con al menos un tipo de manejo distinto a la recolección simple. Las especies 1 manejadas pertenecen a 101 familias botánicas y se utilizan principalmente como alimento, forraje, medicina y ornamentales. Los mayores números de especies manejadas se registraron entre las Cactaceae, Asteraceae, Fabaceae, Crassulaceae y Agavaceae. Aproximadamente 60% de las especies manejadas son nativas de la región y el resto son introducidas de otras regiones de México y del mundo. En total, 40...

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