Phagotrophic protists are diverse and abundant in aquatic and terrestrial environments, making them fundamental to the transfer of matter/energy within their respective food webs. Recognising their grazing impact is essential to evaluate the role of protists in ecosystems, and this includes appreciating prey selectivity. Efforts have been made by groups and individuals to understand selective grazing behaviour by protists: many approaches and perspectives have been pursued, not all of which are compatible. This article, which is not a review, is the product of our discourse on this subject at the SAME 10 meeting. It is the work of individuals, assembled for their breadth of backgrounds, approaches, views, and expertise. Firstly, to communicate ideas and approaches, we develop a framework for selective feeding processes and suggest 6 steps: searching, contact, capture, processing, ingestion, digestion. We then separate study approaches into 2 categories: (1) those examining whole organisms at the community, population, and individual levels, and (2) those examining physiology and molecular attributes. Finally, we explore general problems associated with the field of protistan selective feeding (e.g. linking food selection into food webs and modeling). We do not present all views on any one topic, nor do we cover all topics; instead, we offer opinions and suggest avenues for continued study. Overall, this paper should stimulate further discourse on the subject and provide a roadmap for the future.
Batch culture experiments examined the ability of an isolated bacterial community to utilize four humic substances with similar molecular size but variable elemental composition. Univariate and multivariate linear regression analysis of the results provided evidence of a significant positive relationship between the N:C ratio and bacterial concentrations. In contrast, neither H:C nor O:C ratios were significant predictors of humic substances bioavailability, and their inclusion in the multivariate model provided no further explanatory power compared with the univariate model using N:C as the single independent variable. These findings suggest that N:C ratios provide the best indicator of bioavailability for complex, recalcitrant carbon moieties typical of many aquatic systems.
Two amoebae were presented with six bacterial prey at a range of concentrations, and the growth parameters of the amoebae were deduced. All but one bacterium (Synechococcus) resulted in a positive growth response, but the gram-positive bacterium Staphylococcus aureus proved to be difficult to digest and the heavily pigmented bacterium Klebsiella ozaenae induced unusual amoebic behavior prior to ingestion.Protozoa are the major predators in microbial food webs (2), but the effects of different groups vary depending on the specific habitat. In biofilms, amoebae are considered more important than flagellates and ciliates due to their obligatory surface-associated lifestyle (20), but quantitative studies of amoeba-bacterium interactions are rare. Although in some studies workers have obtained amoebic growth parameters (3,7,17), in very few studies have workers examined the effect of bacterial prey type (28) or concentration (4) on amoebic growth. In this study we addressed this paucity of information by examining the interaction between two amoebae and six bacterial prey at different concentrations.
The use of primers based on the Hipl sequence as a typing technique for cyanobacteria has been investigated. The discovery of short repetitive sequence structures in bacterial DNA during the last decade has led t o the development of PCR-based methods for typing, i.e. distinguishing and identifying, bacterial species and strains. An octameric palindromic sequence known as Hipl has been shown t o be present in the chromosomal DNA of many species of cyanobacteria as a highly repetitious interspersed sequence. PCR primers were constructed that extended the Hipl sequence at the 3' end by two bases. Five of the 16 possible extended primers were tested. Each of the five primers produced a different set of products when used t o prime PCR from cyanobacterial genomic DNA. Each primer produced a distinct set of products for each of the 15 cyanobacterial species tested. The ability of Hiplbased PCR to resolve taxonomic differences was assessed by analysis of independent isolates of Anabaena flos-aquae and Nostoc ellipsosporum obtained from the CCAP (Culture Collection of Algae and Protozoa, IFE, Cumbria, UK). A PCR-based RFLP analysis of products amplified from the 235-165 rDNA intergenic region was used to characterize the isolates and t o compare with the Hipl typing data. The RFLP and Hipl typing yielded similar results and both techniques were able to distinguish different strains. On the basis of these results it is suggested that the Hipl PCR technique may assist in distinguishing cyanobacterial species and strains.
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