No abstract

Genomes carry millions of noncoding variants, and identifying the tiny fraction with functional consequences is a major challenge for genomics. We assessed the role of selection on long noncoding RNAs (lncRNAs) for domestication-related changes in rice grains. Among 3363 lncRNA transcripts identified in early developing panicles, 95% of those with differential expression (329 lncRNAs) between Oryza sativa ssp. japonica and wild rice were significantly down-regulated in the domestication event. Joint genome and transcriptome analyses reveal that directional selection on lncRNAs altered the expression of energy metabolism genes during domestication. Transgenic experiments and population analyses with three focal lncRNAs illustrate that selection on these loci led to increased starch content and grain weight. Together, our findings indicate that genome-wide selection for lncRNA down-regulation was an important mechanism for the emergence of rice domestication traits.

Changes of sucrose metabolism in the subtending leaf to cotton (Gossypium hirsutum L.) boll at different fruiting branch nodes (FBN) were investigated. Two cotton cultivars, Kemian 1 and Sumian 15, were grown in the field at three planting dates in 2009 and 2011. Cotton planted on different dates but experiencing similar climatic factors flowered on the same date and had similar boll opening dates, but had different FBN. In the present study, boll weight and carbohydrate content were significantly affected by both flowering date (FD) and FBN. However, only cystolic fructose-1,6-bisphosphatase (cy-FBPase) and sucrose-phosphate synthase (SPS) activities of the sucrosemetabolizing enzymes were influenced significantly by FBN, and the influence of FBN was lower with delayed FD. In general, effects of FBN on boll weight and sucrose metabolism in the subtending leaf were higher at the optimal FD (13 August) than those at later FD (9 September 2009 and 2 September 2011), and total fruiting branches were used to characterize cotton physiological age in the current study. Sucrose transport capacity (Tn) and SPS in the subtending leaf had significantly positive correlations with boll weight at 17-24 days post anthesis (DPA), a crucial period when boll weight was significantly affected. In addition, higher SPS activity was favourable for sucrose export and boll weight during boll development.

Variation in soil salt may change the stoichiometry of a halophyte by altering plant ecophysiology, and exert different influences on various plant organs, which has potentially important consequences for the nutrition of consumers as well as nutrient cycling in a saline ecosystem. Using a greenhouse pot experiment, we investigated the effect of salinity variability on the growth and stoichiometry of different organs of Suaeda glauca and Salicornia europaea - two dominant species of important ecological and economic value in the saline ecosystem. Our results showed that appropriate salt stimulated the growth of both species during the vigorous growth period, while high salt suppressed growth. Na significantly increased with increased salt in the culture, whereas concentrations of other measured elements and K:Na ratio for both species significantly decreased at low salt treatments, and became more gradual under higher salt conditions. Furthermore, with the change of salt in culture, variations in leaf (degenerated leaf for S. europaea, considered as young stem) stoichiometry, except N:P ratio, were large and less in stems (old stems for S. europaea) than in roots, reflecting physiological and biochemical reactions in the leaf in response to salt stress, supported by sharp changes in trends. These results suggest that appropriate saline conditions can enhance biological C fixation of halophytes; however, increasing salt could affect consumer health and decrease cycling of other nutrients in saline ecosystems.